Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F16
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0927 + 33082645-33083286                                        145   5e-35
12_01_0590 - 4813764-4814401,4814785-4814872,4815176-4815376,481...    37   0.019
06_01_1013 - 7931756-7935109                                           30   2.1  
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552...    29   3.8  
12_01_0741 + 6649988-6653065                                           28   8.7  
04_04_0561 - 26250488-26251451,26251499-26251620                       28   8.7  

>01_06_0927 + 33082645-33083286
          Length = 213

 Score =  145 bits (351), Expect = 5e-35
 Identities = 83/204 (40%), Positives = 119/204 (58%), Gaps = 12/204 (5%)
 Frame = +3

Query: 228 EIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFK 407
           E+KL+ + RERE  +++A+LYA++   + LE+AY+RD V A +Y A C +L+ Q+     
Sbjct: 2   EVKLWNDKRERELLESLADLYAIIKATEKLERAYVRDLVSAADYEAECLKLISQFNSLSS 61

Query: 408 QVQADEFPNIEAFVAKYRLDCPAALER-IRENKPNLIK----------DDKGNTNKYIAE 554
            +       I  FV  YRLDCPAAL R ++   P  ++               +   IA+
Sbjct: 62  SLAG--VVTIPRFVEAYRLDCPAALNRLVQSGVPATVELRAAASSSAPASSAASAAAIAQ 119

Query: 555 IVSLFITLMDKLRLXFRAMDMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQEWLDKLSEM 731
            V  FIT MD ++L   A D ++P L DL  +M +L  +LP DFEGK+KV EWL KL++M
Sbjct: 120 CVQSFITAMDAVKLNMLANDQVRPLLHDLSTSMGKLGPVLPPDFEGKVKVSEWLAKLNKM 179

Query: 732 SASDELSEAQVRQLVXDLXTSYGA 803
            A DEL+E Q RQL  DL ++Y A
Sbjct: 180 GAGDELTEQQARQLNFDLDSAYSA 203


>12_01_0590 -
           4813764-4814401,4814785-4814872,4815176-4815376,
           4816803-4816830,4817136-4817339,4817352-4819136,
           4820358-4821139
          Length = 1241

 Score = 37.1 bits (82), Expect = 0.019
 Identities = 27/99 (27%), Positives = 52/99 (52%)
 Frame = +3

Query: 528 GNTNKYIAEIVSLFITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQE 707
           G  N  ++++ +L      KLR   + +  ++ ELR +R  +++L+ + D+ +G+ K  E
Sbjct: 7   GAINSLLSKLAALMGEEYGKLRGVRKEVASLEDELRSMRALLEKLAAM-DELDGQAK--E 63

Query: 708 WLDKLSEMSASDELSEAQVRQLVXDLXTSYGAXNKFLHK 824
           W D++ EMS      E  +   +  L  + G+ N F+HK
Sbjct: 64  WRDQVREMSYD---IEDCIDDFLHQLDKNNGS-NGFVHK 98


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +1

Query: 667 CCLMTLKGNSRCKSG*ISYLR-CQHRMNCPKHKCDSWC 777
           C  M LKGN   K G  S    C H ++C  H C   C
Sbjct: 359 CGEMELKGNLSEKDGVFSCSEACSHMLSCGNHACQDIC 396


>07_03_0696 -
           20754773-20754821,20754930-20755028,20755107-20755226,
           20755317-20755402,20756013-20756109,20756181-20756268,
           20756358-20756454,20756797-20756892,20757029-20757125,
           20757571-20757689,20758559-20758616,20758751-20758857
          Length = 370

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
 Frame = +3

Query: 288 YAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEF-----PNIEAFVA 452
           +AVVC + +LE  Y+RD   A E+ A   R ++  +   K+V  D +     P+ +    
Sbjct: 296 WAVVCDVWYLEPQYLRDGETAIEF-AERVRDMIAARAGLKKVPWDGYLKHNRPSPKHTEE 354

Query: 453 KYRLDCPAALERIREN 500
           K R+   + L R+ E+
Sbjct: 355 KQRIFADSVLRRLEES 370


>12_01_0741 + 6649988-6653065
          Length = 1025

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 121 NNKIISINTRNNSSLYSKQILSFI 50
           NNK+I I+  NNSSL S   +SF+
Sbjct: 488 NNKLIVIDGENNSSLVSYPSISFL 511


>04_04_0561 - 26250488-26251451,26251499-26251620
          Length = 361

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 274 TWLSSMLSSVPFSTWRRHTCV 336
           TW +S++ S P  TW+R  C+
Sbjct: 12  TWTTSLILSTPSHTWQRSLCL 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,459,929
Number of Sequences: 37544
Number of extensions: 406011
Number of successful extensions: 1095
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)