Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F16
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21721| Best HMM Match : No HMM Matches (HMM E-Value=.)             183   2e-46
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)           33   0.41 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 33   0.41 
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)                  29   6.6  
SB_32169| Best HMM Match : SNF (HMM E-Value=7.9e-16)                   28   8.7  
SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_21721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score =  183 bits (445), Expect = 2e-46
 Identities = 92/172 (53%), Positives = 122/172 (70%)
 Frame = +3

Query: 303 TLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAAL 482
           TLQ LEKAY+RD V  +EYTAACS+LLVQYK AFK VQ+ ++P +EAF+ K+RLDCPAAL
Sbjct: 3   TLQCLEKAYIRDAVTPREYTAACSKLLVQYKAAFKLVQSADYPTVEAFMKKFRLDCPAAL 62

Query: 483 ERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLXFRAMDMIQPELRDLRDTMDRL 662
           ER++E +P  IKDDKG+T+K IA+ VS                  +QP+LRDL DTM  +
Sbjct: 63  ERVKEGRPITIKDDKGSTSKAIADTVS------------------VQPDLRDLMDTMATM 104

Query: 663 SMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVXDLXTSYGAXNKFL 818
           ++LP+DF+GK KV  W   L+ M ASDEL++ QVRQ++ DL  +Y + N+ L
Sbjct: 105 AILPEDFDGKQKVNMWYQTLNGMKASDELTDEQVRQMLFDLEQAYNSFNRSL 156


>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
          Length = 690

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 9/180 (5%)
 Frame = +3

Query: 303 TLQHLEKAYMRDCVRAQEY---TAACSRL----LVQYKVAFKQVQADEFPNIEAFVAKYR 461
           T +H+ + +  D  R QEY   T    +L    L+Q K        DEF  +E    K  
Sbjct: 371 TFRHVIEIHREDTSRKQEYWQDTVKSLQLKNKKLLQEKRELLIKNRDEFTKLEEEKQKAV 430

Query: 462 LDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLXFRAMDMIQPELRDL 641
            D  A L+  +    +++KD K   NK         I L +KL+         Q E    
Sbjct: 431 YDLTAMLDEKQAKYTSMLKDLKNERNK--------IIELEEKLKALEEQNSQRQEEYDSN 482

Query: 642 RDTMD-RLSMLPDDFEGKLK-VQEWLDKLSEMSASDELSEAQVRQLVXDLXTSYGAXNKF 815
           + T +  L +L    E +LK  ++ L++L E   S++L++ Q   L  +      A  KF
Sbjct: 483 KSTHENELLVLKAKHEEELKETKQQLEEL-EKEKSEKLTKEQEEALEEERKKLTEANEKF 541


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 32/170 (18%), Positives = 75/170 (44%)
 Frame = +3

Query: 315 LEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIR 494
           ++KA  RD +   E  + C  ++ + +  ++ +           + K +      +++ +
Sbjct: 176 IDKAKYRDII--DEALSKCRDIIDKAQSKYRDIIDKAQSKYRDIIDKAQSKYRDIIDKAQ 233

Query: 495 ENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSMLP 674
            N  ++I   + N    I +  S +  ++DK +  +R +D  Q + RD+ D     S   
Sbjct: 234 SNYRDIIDKAQSNYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQSKYRDIID--KEQSKYR 291

Query: 675 DDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVXDLXTSYGAXNKFLHK 824
           D  + +   ++ +DK ++    D + +AQ   ++ +  T+Y   +K L K
Sbjct: 292 DIDKAQSNYRDIIDK-AQSKYRDIIEKAQ--NIIENAQTNYRDIDKALSK 338



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 34/168 (20%), Positives = 75/168 (44%), Gaps = 1/168 (0%)
 Frame = +3

Query: 282 ELYAVVCTLQHLEKAYMRDCVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYR 461
           EL A     + L +  +   ++  +Y     +   +Y+    + Q +++ +I+   +KYR
Sbjct: 30  ELKAKFKREEKLHRDIIDKALQQSKYRDIIEKARSKYRDIIDKAQ-NKYRDIDKAQSKYR 88

Query: 462 LDCPAALERIRENKPNLIKDDKGNTNKYIAEIVSLFITLMDKLRLXFRAMDMIQPELRDL 641
            D   A  + R+    +I+  +      I +  S +  ++DK +  +R +D  Q + RD+
Sbjct: 89  -DIDKAQSKYRD----IIEKSRSKYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQSKYRDI 143

Query: 642 RDTMDRLSMLPDDFE-GKLKVQEWLDKLSEMSASDELSEAQVRQLVXD 782
            D     S   D  E  + K ++ +DK    S   ++ +A+ R ++ +
Sbjct: 144 IDKAQ--SKYRDIIEKAQSKYRDIIDK--AQSKYRDIDKAKYRDIIDE 187


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 21/89 (23%), Positives = 44/89 (49%)
 Frame = -3

Query: 595  RRSLSIRVINNETISAMYLLVFPLSSLMRFGLFSLIRSKAAGQSNLYLATKASILGNSSA 416
            R  LS R ++ +TIS   L         +  +    R+  A ++N+Y AT+A++   +  
Sbjct: 1747 RSVLSRRHMDADTISYCGLTRATRYKTAKTKVNHATRAIVATKANVYHATRATVATKAKV 1806

Query: 415  CTCLKATLYCTRRRLHAAVYSCALTQSRM 329
            C   +AT+  T+  ++ A  +   T++++
Sbjct: 1807 CHATRATV-ATKANVYHATRATVATKTKV 1834


>SB_23967| Best HMM Match : SRCR (HMM E-Value=5.4e-11)
          Length = 3369

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 598  SSVQWT*FSPNFVTFATPWTGSACCLMTLKGNSRCKSG*ISYLRCQHRMNCPKHKCD 768
            S+  +T  +  F    TP+TGS     T +    CK G    L    + +CP  KCD
Sbjct: 3157 STTPFTGSTTPFTGSTTPFTGSTTPPPTTRPPCECKDGETGVLAEDGKCDCPP-KCD 3212


>SB_32169| Best HMM Match : SNF (HMM E-Value=7.9e-16)
          Length = 258

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 274 LSCFSRSRAFLYNLISSYNSGRVSCIFIISSQI 176
           LSC S+   F++NL  S++ G +S +F++  ++
Sbjct: 92  LSCVSKGGMFVFNLFDSFSCG-LSLLFVVCFEL 123


>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 636 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELS 752
           ++ D ++ LS LP DF   L+ ++W  +   + A ++L+
Sbjct: 273 EMMDAVEILSKLPKDFYENLEAKKWQTRKEALEALEKLA 311


>SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 876 FQQYSIYLIKGILDKFSPCVKIYXKPHMRSXGRTPAVALVLRTVHPMLTSQITYLATL 703
           F  + + ++  IL     CV IY +P +RS      VAL    V  +LT+ +T   TL
Sbjct: 21  FAVFLVIILVTILGNTLVCVAIYRQPRLRSTTNYYVVAL---AVLDILTAALTMSLTL 75


>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1332

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/33 (30%), Positives = 23/33 (69%)
 Frame = -3

Query: 274  LSCFSRSRAFLYNLISSYNSGRVSCIFIISSQI 176
            LSC S+   +++NL  S++ G +S +F+++ ++
Sbjct: 1224 LSCVSKGGMYVFNLFDSFSCG-ISLLFLVTFEL 1255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,033,920
Number of Sequences: 59808
Number of extensions: 540875
Number of successful extensions: 3782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3776
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)