Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F16
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-11|CAB54493.1|  210|Caenorhabditis elegans Hypothetical...   190   1e-48
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      29   3.3  
AC025715-8|AAK68439.2|  531|Caenorhabditis elegans Enhanced rnai...    29   4.4  
AC006712-7|AAK39318.2|  264|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical p...    29   5.8  
Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z19555-6|CAJ15163.1|  187|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AL110500-11|CAB54493.1|  210|Caenorhabditis elegans Hypothetical
           protein Y87G2A.10 protein.
          Length = 210

 Score =  190 bits (463), Expect = 1e-48
 Identities = 95/209 (45%), Positives = 137/209 (65%)
 Frame = +3

Query: 198 MQDTRPELYEEIKLYKNAREREKHDNMAELYAVVCTLQHLEKAYMRDCVRAQEYTAACSR 377
           M      L  E++L++N  ERE+ +N++EL+AV+  L+HLEK + RD V A EY + C +
Sbjct: 1   MSSQNANLMREVRLFENHSEREQMENLSELFAVLNALEHLEKMFSRDHVSADEYKSECFK 60

Query: 378 LLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTNKYIAEI 557
           L+ QYKV  + V      +IE F  KYRL CPAA+ERIRE +P  +KDD+GN  K+IA I
Sbjct: 61  LIDQYKVTMRLVHGAT--SIEDFAKKYRLHCPAAIERIREGRPITVKDDQGNVLKHIASI 118

Query: 558 VSLFITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSA 737
           V  FIT +D LRL  RA+D + P L DL + ++  S +P D     KV++W D+LS M+A
Sbjct: 119 VEQFITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRVPIDAIVTTKVKKWHDRLSSMAA 178

Query: 738 SDELSEAQVRQLVXDLXTSYGAXNKFLHK 824
           SDE+S+   RQ++ D+ ++Y A NK L++
Sbjct: 179 SDEISDEDARQMIFDVESAYQAFNKALNE 207


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical
           protein F22B5.7 protein.
          Length = 1415

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 636 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVXDLXTSYGAXNKF 815
           D  D  D LS +PD F+  ++ ++W ++   +    +L  A  +    D   +YGA  + 
Sbjct: 291 DFLDAFDVLSKMPDGFDTNIESKKWQERKEALEGLLQLITANPK---LDPKANYGALVER 347

Query: 816 LHK 824
           L K
Sbjct: 348 LQK 350


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = +3

Query: 636 DLRDTMDRLSMLPDDFEGKLKVQEWLDKLSEMSASDELSEAQVRQLVXDLXTSYGAXNKF 815
           D  D  D LS +PD F+  ++ ++W ++   +    +L  A  +    D   +YGA  + 
Sbjct: 291 DFLDAFDVLSKMPDGFDTNIESKKWQERKEALEGLLQLITANPK---LDPKANYGALVER 347

Query: 816 LHK 824
           L K
Sbjct: 348 LQK 350


>AC025715-8|AAK68439.2|  531|Caenorhabditis elegans Enhanced rnai
           (rna interference)protein 5 protein.
          Length = 531

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
 Frame = +3

Query: 381 LVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRENKPNLIKDDKGNTN-----KY 545
           LV    ++   Q  EF NI +  AK+++         R ++P+L+ +  G  N     K 
Sbjct: 139 LVHLSDSWTDTQCTEFRNIVSKFAKFQITANQCDVDFRSDRPSLLVNLYGLPNGTEIDKK 198

Query: 546 IAEIVSLFITLMDKLRLXFRAMDMIQPELRDLRDTMDRLSML 671
           +A      +++ + +   F    M+ P+L +L    D L ++
Sbjct: 199 VAIEEICAVSMQNVMVSQFPTNFMVNPKLEELDKEQDHLDVI 240


>AC006712-7|AAK39318.2|  264|Caenorhabditis elegans Hypothetical
           protein Y119C1B.9 protein.
          Length = 264

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 229 RLNCTKMRVNEKSMITWLSSMLSSVPFSTWRRHTCVIV*EHRNTQRHAVV--SSCSTKWL 402
           +L C+   + +   I W+     SV  + WR   C    EH+N Q+  ++  S+C  +  
Sbjct: 60  KLYCSFTSLPQPVQIQWMFRPSDSVN-AQWREFPCAKKEEHKNCQKEEIIVESNCEVRMN 118

Query: 403 SNK 411
           S K
Sbjct: 119 SLK 121


>Z27079-10|CAD90180.1|  658|Caenorhabditis elegans Hypothetical
           protein T05G5.9b protein.
          Length = 658

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 612 DMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQE 707
           DMI  ELRDL   +D+L+  L D  E  +K QE
Sbjct: 122 DMISLELRDLESKVDQLNRALRDKTEALIKAQE 154


>Z27079-9|CAA81596.2|  660|Caenorhabditis elegans Hypothetical
           protein T05G5.9a protein.
          Length = 660

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 612 DMIQPELRDLRDTMDRLS-MLPDDFEGKLKVQE 707
           DMI  ELRDL   +D+L+  L D  E  +K QE
Sbjct: 124 DMISLELRDLESKVDQLNRALRDKTEALIKAQE 156


>Z19555-6|CAJ15163.1|  187|Caenorhabditis elegans Hypothetical
           protein F02A9.7 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 275 VIMLFSFTRIFVQFNLFIQFRTCILHLYYFFTDL*QSQYQIMKQTRETS 129
           +I++F+   +  QF+LFI    C  + +  F D     Y IM+ T + S
Sbjct: 4   LILIFTLPTVISQFHLFIVI-NCDSYCHVTFRDNEMQYYSIMENTAQIS 51


>Z77661-8|CAB01189.1|  438|Caenorhabditis elegans Hypothetical
           protein F40G12.10 protein.
          Length = 438

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +3

Query: 339 CVRAQEYTAACSRLLVQYKVAFKQVQADEFPNIEAFVAKYRLDCPAALERIRE 497
           C     Y A  +       +A +++QA E PNI+      R   PAA+E + +
Sbjct: 336 CAIVSNYGAGRAGSFFVAVLAIEKLQAGEAPNIKEIALSVRSQRPAAIETLSQ 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,657,778
Number of Sequences: 27780
Number of extensions: 389699
Number of successful extensions: 1058
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)