Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F14
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    32   0.085
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    31   0.15 
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.79 
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    26   5.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   7.4  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = -3

Query: 581 DQHATEVHGRAVTEHSPQLSLTIDFNNMNIIFNAKCLQEDILHMRCTIARRGFGGQAKQC 402
           D+ +  V  R +TEHS ++S  I + ++ ++F A   Q +  +     A   F G +   
Sbjct: 73  DELSGIVKARYLTEHSSRISFYICYFSIFLLFFAISFQAECYYSLTAYATSAFAGHSLLS 132

Query: 401 TIAVLR*VLN 372
           TIAV   +++
Sbjct: 133 TIAVANNIIS 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 25/86 (29%), Positives = 41/86 (47%)
 Frame = +3

Query: 294 SIGQCIKTVLRRACVEKRLTIGLLPAIQYLSKNCNGALFCLTAEAPPGDSATHMQDVLLQ 473
           S+   +K VL+RA V   L  G+  A + L +    A  C+  E+   D   +++  L++
Sbjct: 28  SVEDALKEVLKRALVHDGLARGIREASKALDRR--QAHLCVLCESC--DQEAYVK--LVE 81

Query: 474 AFCVENDIHVIKVDCETKLRRMLGYC 551
           A C E++  +IKV     L    G C
Sbjct: 82  ALCAESETPLIKVADPKVLGEWAGLC 107


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +3

Query: 177  RSLEISEIQELRSIRLSKMYKEAVVPV-KAETFSVIAAKSSIGQCIKTVLRRACVEKRLT 353
            + L   +++ ++   +  ++ E+ +   KAE FS  A   SIG+  K +L  +   K+L 
Sbjct: 1317 QGLSKDKVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLD 1376

Query: 354  IGLLPAIQYLSKNCNG 401
             GL P +   S    G
Sbjct: 1377 KGLPPKVNGKSSVTRG 1392


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = +1

Query: 460 MSSCKHFALKMIFMLLKSIVRLS*GECSVTALPWTSVACWSTIRIQIHSQTVKK 621
           MS+  +  LK +    ++      GEC V   PW     WS I+  +    V K
Sbjct: 246 MSNMDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSWLDPVVVSK 299


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 541  SVTALPWTSVACWSTIRIQIHSQTVKK*IYQHYLKPRDS*STT 669
            S + + WT++AC +TI      ++VK   Y ++L+  ++ S T
Sbjct: 1651 SYSQILWTAIACLTTIHEDEFIESVKI-AYAYFLRVEETDSAT 1692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,178
Number of Sequences: 5004
Number of extensions: 66526
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)