Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_F14
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.052
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.091
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 34 0.12
SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12) 33 0.37
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17) 31 1.5
SB_28930| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_57802| Best HMM Match : Glyco_transf_10 (HMM E-Value=3.1e-05) 30 2.0
SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21) 29 4.5
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 28 7.9
SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 35.5 bits (78), Expect = 0.052
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 411 CLTAEAPPGDSATHMQDVLLQAFCVENDIHVIKVDCETKLRRMLGYC--SPMDFSCVLVH 584
C+ E D + L++AFC E I V+KVD KL+ + G+ S C+LV
Sbjct: 9 CVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAGFSQESTEPVHCLLVK 68
Query: 585 YPY 593
Y
Sbjct: 69 DDY 71
>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 34.7 bits (76), Expect = 0.091
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +3
Query: 411 CLTAEAPPGDSATHMQDVLLQAFCVENDIHVIKVDCETKLRRMLGYC--SPMDFSCVLV 581
C+ E D + L++AFC E I V+KVD KL+ + G+ S C+LV
Sbjct: 9 CVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAGFSQESTEPVHCLLV 67
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 34.3 bits (75), Expect = 0.12
Identities = 26/85 (30%), Positives = 42/85 (49%)
Frame = +3
Query: 297 IGQCIKTVLRRACVEKRLTIGLLPAIQYLSKNCNGALFCLTAEAPPGDSATHMQDVLLQA 476
I ++ VL+ A + L+ GL A + L K A C+ + D A +++ L++A
Sbjct: 21 INTALQEVLKTALIHDGLSRGLHEAAKSLDKR--EAHLCILSNNC--DEAMYVK--LVEA 74
Query: 477 FCVENDIHVIKVDCETKLRRMLGYC 551
C E+ I ++KVD KL G C
Sbjct: 75 LCAEHGIPLLKVDDSKKLGEWAGLC 99
>SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12)
Length = 595
Score = 32.7 bits (71), Expect = 0.37
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Frame = +3
Query: 378 YLSKNCNGALF---CLTAEAPPGDSATHMQDVLLQAFCVENDIHVIKVDCETKLRRMLGY 548
+L K +G +F CL +A +S +H+ VL ++C T++ L
Sbjct: 300 WLIKGKDGRIFSAHCLGCKAGLAESCSHIASVLFY------------IECWTRINGKLA- 346
Query: 549 CSPMDFSCVLVHYPYTDPFTDSQEIDLSTLSEAERQLIDHCESDWGYSQ 695
C+ + S +L Y + ++EID S+ + + +L D+ ES YSQ
Sbjct: 347 CTQVKCSWLLPTYVSNVTYARAKEIDFSSAKKLKEKLDDNIESFNEYSQ 395
>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
Length = 1828
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +3
Query: 510 VDCETKLRRMLGYCSPMDFSCVLVHYPYTDPFTDSQEIDLSTLSEAERQLIDHCESDWGY 689
++C T++ L C+ + S +L Y + ++EID S+ + + +L D+ ES Y
Sbjct: 1232 IECWTRINGKLA-CTQVKCSWLLPTYVSNVTYARAKEIDFSSAKKLKEKLDDNIESFNEY 1290
Query: 690 SQ 695
SQ
Sbjct: 1291 SQ 1292
>SB_28930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 727
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -3
Query: 563 VHGRAVTEHSPQLSLTID-FNNMNIIFN-AKCL--QEDILHMRCTIARRGFG 420
VHGR V EH +L T+D N + N KC+ +++ M ++ +G G
Sbjct: 242 VHGRTVEEHDARLRKTLDLLKNKGLTLNKKKCVFRMSELIFMGYLLSSKGIG 293
>SB_57802| Best HMM Match : Glyco_transf_10 (HMM E-Value=3.1e-05)
Length = 236
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 278 YSS*KLYRTMYQDSVKASLCRKKVNNWLTSRHS-ILIEELQ 397
Y + KL+RT+ SV + VN+W+ + HS IL++E +
Sbjct: 146 YITEKLWRTLMLGSVPIYYGSRTVNDWMPNNHSVILVQEFK 186
>SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 29.9 bits (64), Expect = 2.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 133 KC*CIL*KFTFGFHCGVWKLV 195
KC C + K TFGFH G W+ +
Sbjct: 71 KCTCPIDKATFGFHGGKWRCI 91
>SB_51205| Best HMM Match : RVT_1 (HMM E-Value=1.7e-21)
Length = 387
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -3
Query: 563 VHGRAVTEHSPQLSLTID-FNNMNIIFN-AKCL--QEDILHMRCTIARRGFG 420
VHGR V EH +L T+D N + N KC+ ++ M ++ +G G
Sbjct: 172 VHGRTVKEHDARLRKTLDLLKNKGLTLNKEKCVFRMSELTFMGYLLSSKGIG 223
>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1529
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -3
Query: 563 VHGRAVTEHSPQLSLTID-FNNMNIIFN-AKCL--QEDILHMRCTIARRGFG 420
VHGR V EH +L T+D N + N KC+ ++ M ++ +G G
Sbjct: 999 VHGRTVEEHHARLRKTLDLLKNKGLTLNKEKCVFRMSELTFMGYLLSSKGIG 1050
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 28.3 bits (60), Expect = 7.9
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 7/204 (3%)
Frame = +3
Query: 63 YCVTSSNYXREV*VCLHNRRILCKVLVHSVKIHIRISLRSLEISEIQELRSIRLSKMYKE 242
Y V Y + VC N + + +H+ + + ++L SE LRS + +
Sbjct: 976 YEVVRDAYDNCITVC--NMENVDPLGIHTGESIVVAPSQTLTNSEYNMLRSTAIKVIKHL 1033
Query: 243 AVVPVKAETFSVIAAKSSIGQCIKTVLRRACVEKRLTIGLLPAIQYLSKNCNGALFCLTA 422
VV +++ IG C+K+V + +R L A++ + ++ G A
Sbjct: 1034 GVVGECNIQYALNPDSQEIGSCMKSVGEVMAIGRRFEEALQKALRMVDESNLGFDSHRNA 1093
Query: 423 EA-----PPGDSATHMQDV-LLQAFCVENDIHVIKVDCETKLRRMLGYCSPMDFSCVLVH 584
+ P D H+ L + + ++ + K+D L RM +D+ +L
Sbjct: 1094 ASDEELREPSDKRIHVVAASLKEGYTIDRLYELTKID-RWFLHRMKAI---IDYGTMLKS 1149
Query: 585 Y-PYTDPFTDSQEIDLSTLSEAER 653
Y +DP + E+ + L EA+R
Sbjct: 1150 YRAGSDPVSQKPEVTYNHLLEAKR 1173
>SB_54792| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 472 KHFALKMIFMLLKSIVRLS*GE-CSVT-ALPWTSVACWSTIRIQIHSQTVKK 621
+H A K +F +S +++ E CS T WTS CW T R+ +T +K
Sbjct: 90 QHGAGKTVFKYRRSDIKVELLEGCSYTFKAKWTSRQCWRTYRLCGKLETWRK 141
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,583,866
Number of Sequences: 59808
Number of extensions: 503230
Number of successful extensions: 1112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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