Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_F11
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 101 1e-22
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 87 2e-18
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 73 3e-14
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 30 0.29
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.6
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 2.1
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 26 4.7
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 6.3
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 26 6.3
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 101 bits (241), Expect = 1e-22
Identities = 46/93 (49%), Positives = 62/93 (66%)
Frame = +1
Query: 394 RKGDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVI 573
+ GD + MHYTGTL +G +FDSS+ RG+P +G GQ+I+GWD+G+ M GE+ KL I
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTI 77
Query: 574 PPELAYGSAGAPPKIPKSATLTFHVELVKIERK 672
P+ YG G P IP ++TL F VEL+ I K
Sbjct: 78 TPDYGYGPRGFPGLIPPNSTLLFDVELLAINDK 110
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 87.0 bits (206), Expect = 2e-18
Identities = 41/88 (46%), Positives = 58/88 (65%)
Frame = +1
Query: 400 GDLLHMHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPP 579
G + M Y G L++G FD + +G P F LG G+VI+GWD G+ GM EG +RK+ IP
Sbjct: 275 GKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPA 333
Query: 580 ELAYGSAGAPPKIPKSATLTFHVELVKI 663
+AYG+ P IPK++TL F V+LV++
Sbjct: 334 PMAYGNQSI-PGIPKNSTLVFEVKLVRV 360
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 73.3 bits (172), Expect = 3e-14
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = +1
Query: 415 MHYTGTLDDGTEFDSSIPRGNPLTFKLGSGQVIKGWDQGLLGMCEGEQRKLVIPPELAYG 594
M Y G L +G FD +I G P TF LG +VIKGWD G++GM G +R + IP +AYG
Sbjct: 281 MRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYG 339
Query: 595 SAGAPPKIPKSATLTFHVELVKI 663
S P IP ++ L F V+L+ +
Sbjct: 340 SKRL-PGIPANSDLVFDVKLLAV 361
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 30.3 bits (65), Expect = 0.29
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -2
Query: 199 SLFNCYKTLL-NTKMRFKSTLECSVKINL*IEN---YVCRFTHLNNILN 65
SL N Y TLL NT++RF+ L S +N EN +V HL +++N
Sbjct: 628 SLTNWYSTLLKNTQIRFRKILRFSETLNSRFENASDFVISEGHLPDLVN 676
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 580 ELAYGSAGAPPKIPKSATLTFHVELVKIERKD 675
EL Y AG PP +PK A H++ E D
Sbjct: 86 ELDYNKAGDPPILPKQAKDDHHIKRSSSETAD 117
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -3
Query: 660 FHQFYVKSKSSRLWYLWWCSS*TIS--QFWWN 571
F + K + S LW+LW SS S FWW+
Sbjct: 233 FLGIFAKKRFSFLWFLWNTSSAINSTYSFWWD 264
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 624 LWYLWWCSS*TISQFWWNDKFTLFSF 547
++YLW CS SQF + FT+ F
Sbjct: 30 MYYLWACSKFNDSQFIKPESFTIAGF 55
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 672 LSFNFHQFYVKSKSSRLWYLWWCSS 598
LSF +++V+SK + +WCS+
Sbjct: 388 LSFWSREYFVRSKGKSYLHCFWCSA 412
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 449 NLIVQF-LEVTP*PSNLVLVKLLRVGIKGYLECAKENNVNLS 571
NL+ Q+ +E+ S LVL K LR+ ++ LE K ++ S
Sbjct: 21 NLLEQYEVEIARLKSQLVLEKKLRIQVEKELESVKTKQISSS 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,984
Number of Sequences: 5004
Number of extensions: 47916
Number of successful extensions: 127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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