Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F06
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    60   2e-10
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.7  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    25   6.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   6.2  

>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
 Frame = +3

Query: 24  IDVSDFXTKKQASEP-ALAADWAKLXELYNKKLWHQLTLKLQEFVKNPALQRGDXLIQLY 200
           +++SDF   +    P +L   +  + +LY +KLW QLT  L  F   P  +     + LY
Sbjct: 7   VNMSDFLHDQATRAPESLQQSYILMEDLYERKLWKQLTDALIVFFDTP--ETVPLRLPLY 64

Query: 201 NNFLTTFESKIXPLSLVEIIAHIVEQYVNXRDAVTXLEKVETKV---KMNDE------AL 353
            NF+ +F   I  L  V +     E   N  +A+  L ++  ++   K  D       A+
Sbjct: 65  TNFVNSFRPNINQLKAVYMGLKAFESCSND-EALRNLNQIVNELDEEKYKDAYVYSIVAI 123

Query: 354 ALCKVLQGQIYIEQLNDYDAAEKIIEHLXSTLEXADGVTPVHGRFYKLASEYYRXRGPTG 533
           A  K++ G++  E       A KII+H+    +  + +  +H  +Y ++++YY+ +    
Sbjct: 124 ARIKLISGKLD-EARELLVKASKIIDHI----DYVESL--IHSSYYSVSADYYKAKADYA 176

Query: 534 RHYRXPLRYVGCAD 575
           ++YR  L Y+ C D
Sbjct: 177 QYYRHCLLYLSCID 190


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 369  LQGQIYIEQLNDYDAAEKIIEHLXSTLEXADGVTPVH 479
            L  Q Y+ ++ DY   E + + L S L+    + P H
Sbjct: 3054 LNKQNYVNRMVDYKLRESVKDQLKSLLDGFSDIIPSH 3090


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = -2

Query: 501 RLTYKIVRELESHHQHXRVYFXNVQLF---SRLHHNHSAVQCIFVLVAPYT 358
           R  Y+I+  +  H     + F  V L    S+       + CI V V PYT
Sbjct: 51  RQLYEIITYVTLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVIPYT 101


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 429 EHLXSTLEXADGVTPVHGRFYKLASEYY 512
           E + + ++  DG    HG F  L SEY+
Sbjct: 756 ETMDTVIKLKDGELKAHGLFLSLRSEYF 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,751
Number of Sequences: 5004
Number of extensions: 37635
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)