Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F06
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    93   1e-19
AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF188750-1|AAF00547.1|  293|Caenorhabditis elegans putative tyro...    27   9.9  

>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 11/187 (5%)
 Frame = +3

Query: 48  KKQASEPALAADWAKLXELYNKKLWHQLTLKLQEFVKNPALQRGDXLIQLYNNFLTTFES 227
           K  A+   LA DW  L EL+ KKLWHQLT+  +  VK P       + + Y  F+  +E 
Sbjct: 10  KLAAANGPLADDWKNLKELWEKKLWHQLTVLTRSLVKKPQFVASTDMHEFYRLFVAEWEL 69

Query: 228 KIXPLSLVEIIAHIVEQYV--NXRDAVTXLEKVETKVKMNDEALALCKVLQGQIYIEQLN 401
           ++ PL LVEI   I +     + + ++  L K+   +  N + +A+ ++  G+I   +L 
Sbjct: 70  RVNPLQLVEICISIAQNIATKDKQKSMEFLSKIGNVI--NKDKIAVARLHTGEIE-ARLE 126

Query: 402 DYDAAEKIIE------HLXSTLEXAD---GVTPVHGRFYKLASEYYRXRGPTGRHYRXPL 554
           + D   +II+       + ST    D   GVT VH  FY+++S Y R  G    +YR  L
Sbjct: 127 NKDKNGQIIDLKSIRTQIDSTQHEVDSLVGVTEVHAPFYRVSSLYLREVGDFAGYYREAL 186

Query: 555 RYVGCAD 575
           RY+G  D
Sbjct: 187 RYLGVED 193


>AC024882-9|AAF60930.2|  341|Caenorhabditis elegans Hypothetical
           protein Y9C9A.5 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = -2

Query: 495 TYKIVRELESHHQHXRVYFXNVQLFSRL-HHNHSAVQCIFVLVA-PYTEPVLH 343
           TYK+VREL  H +    Y    QLF  L       +  +F+ +   +T P+LH
Sbjct: 225 TYKLVRELSKHGESEYTYKLQSQLFRALVAQAFIPITFLFLPIGILFTAPLLH 277


>Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical
           protein K07A12.3 protein.
          Length = 131

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 51  KQASEPALAADWAKLXELYNKKLWHQLTLK 140
           + A  PA+ ADWAKL +    K +  L++K
Sbjct: 46  RSADIPAIKADWAKLQKFIETKQYVNLSIK 75


>U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical
           protein Y102E9.2 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 165 ALQRGDXLIQLYNNFLTTFESKIXPLSLVEIIAHIVEQYVNXRDAVTXLEKVETKV 332
           A+++   L   ++N LTT   ++  +   E   H+ E +VN +  +   E + T V
Sbjct: 57  AVEKRVILCLAHSNVLTTHGRRLVAVGTNEKQIHVFEYFVNDKGDIVTAEHIVTSV 112


>AF188750-1|AAF00547.1|  293|Caenorhabditis elegans putative
           tyrosine kinase receptorW04G5.6B protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 204 NFLTTFESKIXPLSLVEIIAHIVEQYVNXRDAVTXLEKVE-TKVKMNDEALALCK 365
           N + + E     LSLV ++  IV +YV   D +  L K +  K  +  +  +LCK
Sbjct: 93  NVMCSMEKHPNILSLVGVVTMIVTEYVEDGDLLKFLRKCKFDKDSVKLDEKSLCK 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,848,344
Number of Sequences: 27780
Number of extensions: 216233
Number of successful extensions: 564
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)