Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F05
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    66   2e-11
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    28   7.3  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +3

Query: 216 ASFHKVIVIIGFLSLFHTAFSATQHRSYLRITSQEFTTLPLDIVIQAVVSLFAVMWG 386
           ++ +++I I+  LSL H A+SA QHR YLR+T Q F  LP D+V Q V+SL A+++G
Sbjct: 3   STIYRLITIVSLLSLLHCAYSAAQHRFYLRLTEQPFINLPSDVVAQTVISLIALIYG 59


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 7   ADDFFNKLNLSATET*LSTVRLVRL*KIYNV*QFYKLDTLMQHC 138
           A  F +K  L   E  L T+  VRL   +N+ + Y LD L  HC
Sbjct: 89  AQKFGSKTVLQKCERFLITISTVRLSTKWNLAKQYGLDELQAHC 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,186
Number of Sequences: 27780
Number of extensions: 324486
Number of successful extensions: 798
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)