Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_F04
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 2.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.8
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 3.8
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 26 5.1
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 26 5.1
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 25 6.7
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 25 8.9
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 8.9
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce... 25 8.9
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 2.9
Identities = 24/129 (18%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Frame = +1
Query: 106 VLGMNFELEESLLTQSGPVSERMEKWTEAQRKGQKIDIDVYGKPSEKQLRELEHVRSLSK 285
+ G +L+ES+ +S + + + +++ + ++ + E +++E ++SLS
Sbjct: 732 ITGETTDLQESMHHKSRMLELVVLELHTLEQQANDLKSELSSEMDELDPKDVEALKSLSG 791
Query: 286 ELQDNLHELETAVRIADVENQAMNPTAPMLDYS-EDHEFVSANRLNNCYGDEDLVDAKE- 459
++++ HE + ++ E + L+Y + ++ N L G ++ +D E
Sbjct: 792 QIENLSHEFDAIIK----ERAHIEARKTALEYELNTNLYLRRNPLKAEIGSDNRIDESEL 847
Query: 460 -EEKRRLTK 483
KR L K
Sbjct: 848 NSVKRSLLK 856
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 94 QTRAVLGMNFELEESLLTQSGPVSERMEKWTEAQRKG 204
Q +A L N+E E LTQ + E W + +G
Sbjct: 179 QEKASLQTNYEFELQKLTQKNSILENNNTWLSRELQG 215
Score = 25.4 bits (53), Expect = 6.7
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = +1
Query: 241 EKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLN 420
+ LREL KE+ DN +EL ++N+ +N L + D + NRL
Sbjct: 1196 DNDLRELVSYLRHEKEIMDNKYELTI------LDNRGLNQQVKSLQSTVDSLQLELNRLQ 1249
Query: 421 NCYGDEDLVD 450
+ D D
Sbjct: 1250 SLPVSNDQTD 1259
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 3.8
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +1
Query: 283 KELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKEE 462
+EL+++ +L+ VR+ EN + + + +D LN L + ++
Sbjct: 345 QELRNSFQQLQELVRVVLHENGRVTRLVDVSNTLDD--------LNKDMRFHKLSEVRQH 396
Query: 463 EK--RRLTKDGRISLKASRVIEKVV 531
+ TKD ++ ASRVIEK+V
Sbjct: 397 VNTLKEATKDDELAALASRVIEKIV 421
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +1
Query: 427 YGDEDLVDAKEEEKRR 474
YGDED ++ ++EE+RR
Sbjct: 764 YGDEDELEQEQEERRR 779
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 220 DVYGKPSEKQLRELEHVRSLSKELQDNLHELE 315
D Y PS R+ +++ L+K LQD+L ELE
Sbjct: 5 DAYHWPSRTPSRKGSNIK-LNKTLQDHLDELE 35
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 226 YGKPSEKQLRELEHVRSLSKELQDNLHEL 312
+ P+E + +EH +L K+++D H L
Sbjct: 589 FENPNEGEKEIVEHYETLHKKIEDKFHTL 617
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 25.0 bits (52), Expect = 8.9
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Frame = +1
Query: 19 EADSRRVTNYAVKIN*IRTLYFVQVQTRAVLGMNFELEESLLTQSGPVSERMEKWTEAQR 198
E SR T+ +KI T + +V++R + +N E + + + P M+ E R
Sbjct: 84 EISSRTFTDSLLKIASDSTTHN-RVRSRIAVLVN---EWAEIMKKDPNMSLMQDICEKIR 139
Query: 199 KGQKIDIDVYGKPSEKQLRELEHVRSLSKELQD--NLHELETAVRIADVENQAMNPTAPM 372
K +D+ KP ++ + ELE R +ELQ L E+ + VEN P+
Sbjct: 140 KLDIVDLRAPKKPEKEAMNELELKRE-EEELQYALALSLSESTAQSNKVENPQSTKDEPL 198
Query: 373 LDYSEDHE 396
++ E
Sbjct: 199 QKTNQRQE 206
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 8.9
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 280 SKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKE 459
S+ L DN+ L + R A + + L SED EF + + + DL K+
Sbjct: 60 SESLDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEF---DDDFDTWEQVDLSPNKQ 116
Query: 460 EEKRRL 477
E+K+ L
Sbjct: 117 EDKKDL 122
>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 241 EKQLRELEHVRSLSKELQDNLHELETAVRIADVEN 345
+K+L+E + R+ +KEL + + LET VR ++EN
Sbjct: 284 KKKLKEQQLERT-AKELTEKVAILETRVRELEMEN 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,170,644
Number of Sequences: 5004
Number of extensions: 39502
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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