Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F01
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07)                 35   0.015
SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)          28   2.3  
SB_32924| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_15738| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  

>SB_23063| Best HMM Match : TPR_1 (HMM E-Value=3.1e-07)
          Length = 374

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 17  LMAVAITSGVVVVYRMXYAPYVKRKRYXVAEEWANKIIEYEEQTEETKASISTSQIS 187
           ++ V  T  + + Y      Y+K+K+   AE +A+K  EY E  EE K+ +    +S
Sbjct: 267 MIGVVSTEELCIAYTFVARYYLKKKKLMEAEVYAHKCCEYNESREEGKSLLKEIALS 323


>SB_31535| Best HMM Match : Oxysterol_BP (HMM E-Value=1.6e-08)
          Length = 836

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 83  KRKRYXVAEEWANKIIEYEEQTEETK 160
           K+KRY +  +W +KI  Y  +T  T+
Sbjct: 336 KKKRYTLKGDWTDKITCYRSETHVTR 361


>SB_32924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -2

Query: 276 VYLHIYFIYISRMTLP-ARQSNI*XVYIHQYEIWDVEILALVSSVCSSYSMIL 121
           VY+ +Y +Y S+MT P   Q     +Y+  +  +   +L L +     Y +I+
Sbjct: 58  VYVPVYLVYASKMTWPLGGQVGCRVMYLLFFTAYGASVLTLGALSFERYRLIV 110


>SB_15738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 282 SNVYLHIYFIYISRMTLPARQSNI*XVYIHQYEIWDV 172
           SNVYL +  I  S   LPA    +  V IHQ E+ D+
Sbjct: 5   SNVYLFVNQILES---LPASDKRLEEVRIHQQEVEDI 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,624,567
Number of Sequences: 59808
Number of extensions: 91083
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)