Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_F01
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   3.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   3.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.4  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   7.2  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 282 SNVYLHIYFIYISRMTLPARQSNI 211
           S VYL IY     R+   ARQS I
Sbjct: 213 SLVYLEIYLATRRRLRERARQSRI 236


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 282 SNVYLHIYFIYISRMTLPARQSNI 211
           S VYL IY     R+   ARQS I
Sbjct: 213 SLVYLEIYLATRRRLRERARQSRI 236


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 282 SNVYLHIYFIYISRMTLPARQSNI 211
           S VYL IY     R+   ARQS I
Sbjct: 213 SLVYLEIYLATRRRLRERARQSRI 236


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 91  LSFYVRSVXHSIXXDDTRSNCY 26
           L  Y RS  H     + RSN Y
Sbjct: 240 LQKYTRSFAHQSINKEARSNLY 261


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = -1

Query: 91  LSFYVRSVXHSIXXDDTRSNCY 26
           L  Y RS  H     + RSN Y
Sbjct: 235 LQKYTRSFAHQSINKEARSNLY 256


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 173 SRYLL*FLPFALHIL 129
           ++Y L F PF  HIL
Sbjct: 880 NKYALKFFPFDKHIL 894


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,106
Number of Sequences: 438
Number of extensions: 868
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)