Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E18
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual         35   0.011
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    29   0.92 
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    27   3.7  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   3.7  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   4.9  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   6.5  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   6.5  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   8.6  

>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
 Frame = +3

Query: 141 VMSKGELGIVEKGKDDYQTEADRSAQRCIVASLAAQYPNLKIIGEEDS--LEDEGEVVSD 314
           +  K   G + K      T  D  AQ  +++ L   +PN  I+GEEDS  L +  +  S 
Sbjct: 29  IKEKSAAGALTKDDKSPVTIGDFGAQAIVISMLKDAFPNDPIVGEEDSDFLRENTQTCSR 88

Query: 315 -W-LVNEI------DKEILKLQCPPNLQEVKEEDIV-------VW-VDPLDGTSEYTQGF 446
            W LV E        KE+ +++    +  + ++          +W +DP+DGT  + +G 
Sbjct: 89  VWELVQETIQHATEYKELGQIKSAEEMMSIIDQGSYHGGRNGRMWTLDPIDGTKGFLRG- 147

Query: 447 LEHVTVLIGIAVNETPVAGVIHQP 518
                + + +  N  PV   I  P
Sbjct: 148 -AQYAICLALIENGKPVVSAIGCP 170


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 600 TPAPPPESIVITTTRSHSNPVVEEALK 680
           TP PPP  + + +T   S P  EE +K
Sbjct: 318 TPLPPPPPVAVNSTNDESAPQNEELVK 344


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 276 EDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKEEDIVVWVDPLDGTS 428
           E  L D+ E  S + +NE+ K+I +       QE +  D + W D L  TS
Sbjct: 171 EGELHDDNETDS-FRINELAKQIQETSLGATTQEDESSDGICW-DELSTTS 219


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 584 GCRWIYPGSSS*IHRNYNY*KPFESCCGGGTKSYECFKGAXG 709
           G  W   G S  +  N +  KP+E C     +++E  +GA G
Sbjct: 412 GFDWREAGCSMCLGMNPDQLKPYERCASTSNRNFEGRQGAKG 453


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 311 THNFTLILQTIFF--TYYF*VRILSCK*CNNTALSRPICFCLIVVFTLFHYTKFPFAHYI 138
           TH FT  ++TIFF  T  F  ++ S     N  +S    F L +V  L  +T+  F  ++
Sbjct: 137 THTFTNSIETIFFFLTILFLSKLNSVP--LNKKISYLYTFLLAIVSVLGFFTRITFLAFV 194


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 264 IIGEEDSLEDEGEVVSDWLVNEIDKEILKLQCPPNLQEVKE-EDIVVWVDPLDGTSEYT 437
           II   DS+ +  EV+     + IDK+I KLQ   N+  V E E I+ +V  L  +S YT
Sbjct: 275 IITALDSVSNSQEVLL-LSTDSIDKKIAKLQNSTNIFYVPEHEPILAFVHQL--SSSYT 330


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -1

Query: 674 CLLHNRIRMASSSCNYDGFRRRSRGKSTYTHTMQSPNCPTDFLVTFNYIFIVWLMDDTSN 495
           CLL  R     +S   D   ++ R K      + + + P D     NY+F V L    ++
Sbjct: 297 CLLVARQTDVENSIRLDFISKKLR-KRLNGDVVHNLDVPHDKSYKSNYLFSVVLSPHQAS 355

Query: 494 WCLIHSYTN 468
           W + +S+ N
Sbjct: 356 WNIYNSFDN 364


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 96  SSVSVANRAGKIVRDVMSKGEL 161
           S +++ NR GK+ + + SKG++
Sbjct: 235 SKIAIINREGKLTQSLQSKGDV 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,283
Number of Sequences: 5004
Number of extensions: 65206
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)