Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E17
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe...    78   1e-15
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    31   0.21 
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    30   0.28 
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch...    29   0.65 
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    28   1.5  
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   2.0  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.6  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    27   2.6  
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    27   3.5  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   6.1  
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ...    25   8.0  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.0  

>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 139

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
 Frame = +2

Query: 197 LKNVQKVAFSSNTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYQSRKRGMLENDL 364
           L N+  +  S+   N M     E    D+++  +  E R A   RL YQSRKRG+LE DL
Sbjct: 7   LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66

Query: 365 LLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF-DNEIMNLLKKH 541
           LLS FAK  ++ +       YD+L++ P  DWDI YW   ++  P+++  +++   L K+
Sbjct: 67  LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124

Query: 542 AKNEDKIALRQPDL 583
            +++    LR P+L
Sbjct: 125 CRSQRNHTLRMPEL 138


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 206 VQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPL-EKRKARLHYQSRKRGMLENDLLLSTFA 382
           +Q + F  +  NN+DTT ++  L D+ K+  +        H+ + + G ++  L+ + F 
Sbjct: 654 LQAIIFDFSAVNNLDTTAVQ-SLIDIRKELEIYANETVEFHFTNIRSGWIKRTLVAAGFG 712

Query: 383 K 385
           K
Sbjct: 713 K 713


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 31/139 (22%), Positives = 53/139 (38%)
 Frame = +2

Query: 167 TRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 346
           TR   L+   LK+++ +    +    MD    ++ +   +    LEKRKA LH Q  K  
Sbjct: 7   TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63

Query: 347 MLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEFDNEIMN 526
                LL   +    L  +   Q   Y  L NS  +D+        +   P +     + 
Sbjct: 64  QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS-RHDFKELVLHTNQLYEPVKRSQNFLT 120

Query: 527 LLKKHAKNEDKIALRQPDL 583
            + +H ++   +   QP L
Sbjct: 121 SISEHYRDAKLMHQVQPQL 139


>SPAC22A12.14c |||BSD domain protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 347

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 18/76 (23%), Positives = 40/76 (52%)
 Frame = +2

Query: 329 QSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPKEF 508
           + +   ++ +++    F K++   F  K+ +   + I S +++ +IF W  +++   +E 
Sbjct: 191 RKQMESLVPSEVSYDDFWKRF---FWHKEVVQPIKAIQSGNDEEEIFSW-GDERSDEEES 246

Query: 509 DNEIMNLLKKHAKNED 556
           DNE +N  KK +  ED
Sbjct: 247 DNEQVNDEKKQSSEED 262


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -3

Query: 580 IGLSECNFIFIFSMFFEKIHNFIVK 506
           IGLS  NF+  FS FFE I +F++K
Sbjct: 288 IGLS--NFVNSFSSFFELISHFLIK 310


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +2

Query: 92  ETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNM 247
           ET+ +K++ LSK+ K+++++IKM      NL +    N+ K   S  T +++
Sbjct: 33  ETVAVKKVKLSKMLKSDLSVIKMEIDLLKNLDH---PNIVKYRGSYQTNDSL 81


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 104 LKRLSLSKIDKNNMNLIK----MLHTRTLNLSYNALKNVQKVAFSSNTTNNMDTTYMEIP 271
           L+ L + ++D N +  +K    M+H R L +S NA+  ++   F    T  MD      P
Sbjct: 756 LQNLMVLQLDNNKLTNLKASQPMIHLRILRISNNAIHQLEVDQFPHLRTLYMDLNRFNRP 815


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +2

Query: 86  DFETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVA--FSSNTTNNMDTTY 259
           DF +++ + ++ S++   N+ L K  +     +  N +KNV   A    S    N+D  Y
Sbjct: 320 DFSSVIFQPMAKSEVKIKNILLSKYAYLAQNPVGNNKVKNVDSSAGLDESMADLNLDEEY 379

Query: 260 MEIPLYDV 283
           +   L+ V
Sbjct: 380 LPFVLFTV 387


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 170 RTLNLSYNALKNVQKVAFSSNTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYQSRKR 343
           R+L  +YN    +     SS++T N +     ++P    E+++   KRK  +   +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +2

Query: 209 QKVAFSSNTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG--MLENDL-LLSTF 379
           +KV FSS+   N D+TY         K Q L K  A L  Q  K+   +L  DL  L   
Sbjct: 42  EKVKFSSSRFYNKDSTY--------SKDQGLAKESAALELQKLKQENVLLRKDLNNLEQI 93

Query: 380 AKKYLNGFNE--KQTMMYDRLINSPSN 454
           +  Y  G ++  K    Y   +N   N
Sbjct: 94  SDCYAKGMDDIMKHVATYTATMNERMN 120


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/66 (27%), Positives = 31/66 (46%)
 Frame = +2

Query: 68  LYLFDFDFETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNALKNVQKVAFSSNTTNNM 247
           + +F F  ET   K L+L +I++  M++IK   +    L+Y+  K V+K           
Sbjct: 450 IVIFLFAKET---KGLTLEEINELYMSVIKPWESGNFKLNYSEQKKVEKEKSRKGGARGE 506

Query: 248 DTTYME 265
              Y+E
Sbjct: 507 SVEYVE 512


>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 626 RNKFILLTLHFRFNVDRVVGVQFY 555
           R+KF+L++L    N+  ++G+Q Y
Sbjct: 16  RSKFVLISLILLLNLGLLLGIQIY 39


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +2

Query: 44  GFLLKNDHLYLFDFDFETILLKRLSLSKIDKNNMNLIKMLHTRTLNLSYNAL 199
           G L+K   L+LF F FE+ LL  LS + + K      K++  + ++   N+L
Sbjct: 45  GCLIKGIPLFLFFFFFESFLLP-LSFAHLIKQR----KLIFNKAIDFKLNSL 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,805,937
Number of Sequences: 5004
Number of extensions: 60712
Number of successful extensions: 208
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)