Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_E16
(821 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 28 1.8
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 1.8
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.8
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 27 2.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.2
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 4.3
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 4.3
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 27 4.3
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 7.4
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 7.4
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 25 9.8
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 25 9.8
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 9.8
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 569 VPPSVLL-VLVNEHLLKDNLALDFVLEVFAIIKQERGVTSLVTALKKGQLEGRLL 730
VPP+VL + L N + D +++ F I QE+ V L + +GR+L
Sbjct: 131 VPPNVLYRQFADLRQLPPNQSYDTIIQTFCICSQEKAVEQLNNYRSLLRSDGRIL 185
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 116 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLXSAGSKLD 262
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 460 FFQVLVPTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 284
F + PTH F +YL S LI + V + + H + + R + S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205
Query: 283 DFAIASVV 260
I ++
Sbjct: 206 GLFILDLI 213
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 644 PARSPAPGCPSADVRSPGPA 585
PA PAPG P + R P PA
Sbjct: 521 PAGGPAPGYPGMNARGPVPA 540
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 117 NGSRPEKEMRKRSMTRTVSATLWYRVWSGPVAISTQPTSTXTRPDQNSTTDAMAKSYSMY 296
+ S + S+ T SAT S A ++ +S+ NSTT A A S S+
Sbjct: 187 SNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS 246
Query: 297 S 299
S
Sbjct: 247 S 247
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 670 LLLDDREHFQHEVQRQV-VLQQMFVHQDQQH 581
LLLDDREH H+ + + LQ Q H
Sbjct: 581 LLLDDREHLSHDERSYIQQLQSQIKSQSVHH 611
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 4.3
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -1
Query: 656 SRTLPARSPAPGCPSADVRSPGPAARMEARIRYRST--VQSCAPA*CAVRDRSLSS 495
S T+P SPA G P+ +P P A A Y ST S P+ ++R SL++
Sbjct: 300 SATVPI-SPARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTT 354
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +2
Query: 578 SVLLVLVNEHL-LKDNLALDFVLEVFAIIKQERGVTSLVTALKKGQLEGRLLEFLPLNRR 754
S+++ L+N+H+ + VLE +I ++ G+T QL+ L+ +P+++
Sbjct: 173 SIIIKLINQHIDIHIVPGRPTVLENAKVINEQEGITGQSFERGDAQLQPVKLQQMPMDKE 232
Query: 755 SEE 763
E+
Sbjct: 233 MEK 235
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 337 RHRTARQQQAASNEYIEYDFA 275
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 390 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 289
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/42 (23%), Positives = 24/42 (57%)
Frame = +1
Query: 397 HHAKFRTGIRETDASVQVLGKNVRRGNEKGSGLLERLRSRTA 522
H+A + + ++ SV++ G ++ +EKG + ++R+ A
Sbjct: 607 HNAPKKKNLNDSLKSVELEGNGIKLSSEKGKNNVNKVRNDNA 648
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 9.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -3
Query: 468 SNIFSKYLYRRISFTNTCSKFRMVSISSLAE 376
S FS++ Y F NTC F + S E
Sbjct: 460 SKRFSRFYYGHYVFVNTCHNFFLTLYQSFTE 490
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 9.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -3
Query: 438 RISFTNTCSKFRMVSISSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 286
+ S + V S+L + +VL L P P G PA++TSN
Sbjct: 69 KASIPTNINGLSQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,343
Number of Sequences: 5004
Number of extensions: 67959
Number of successful extensions: 240
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -