Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E15
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    70   5e-13
SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex...    42   2e-04
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual    36   0.008
SPAC222.03c |tim10||Tim9-Tim10 complex subunit Tim10|Schizosacch...    30   0.38 
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    28   1.5  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    28   2.0  

>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 69.7 bits (163), Expect = 5e-13
 Identities = 30/72 (41%), Positives = 43/72 (59%)
 Frame = +1

Query: 157 MSETDNVDPQLENFILAETQKQRFQVLVHGLTDTCWDTCMGKPSTRLDSKTEVCIMNCVE 336
           +SE++ ++  L  FI +E QK + Q  +H  T TCW  C+G    +LD   E C+ NCVE
Sbjct: 12  LSESEQLE--LSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNCVE 69

Query: 337 RFIDATTYITKR 372
           RF+D   +I KR
Sbjct: 70  RFLDCNFHIIKR 81


>SPAC17C9.09c |tim13||TIM22 inner membrane protein import complex
           subunit Tim13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 95

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +1

Query: 235 LVHGLTDTCWDTCMGKPSTRLDSKTEVCIMNCVERFIDATTYITKRLMS 381
           L+  + + C+D C+ +P +  D   + C+  C+ER++DA   +++  +S
Sbjct: 37  LISKINENCFDKCIPEPGSTFDPNEKSCVSKCMERYMDAWNIVSRTYIS 85


>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 7/154 (4%)
 Frame = +1

Query: 430 LKMFSNIKNFLNRHRRKFFVTGAV-VGGLYVLTSYAQKKLRDWQEKEAKKFFEMTRKKQH 606
           LK F    N ++R    F +  ++ V G Y   +  +    ++ E    K    ++  + 
Sbjct: 2   LKSFEKHLNAVSRKCCNFILGSSIPVLGFYCADTCIRNAFMEFMETRNSK----SKYVEA 57

Query: 607 FEGTERTCNQTILSLSKIVSESILSLLNTEEIVQKLQE------NPEDKLALWEQLKITI 768
           F   +     + +S   I+ + I+  +    I+Q+L+E      + E+K+ LW QLK   
Sbjct: 58  FNTVQSNGATSAISTFHILKDEIIRRIPLLPIIQELRETRMSEVSAEEKILLWNQLKFMS 117

Query: 769 FTRICVLVYGLCMLQVALRVQLNVXGGYLYKDSV 870
             R+   +  L    +  ++ L V G   +K+ +
Sbjct: 118 LVRMFTTLAVLAQCNLLCKLALTVLGREAFKEQM 151


>SPAC222.03c |tim10||Tim9-Tim10 complex subunit
           Tim10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 154 IMSETDNVDPQLENFILAETQKQRFQVLVHGLTDTCWDTCMGKPSTRLD-SKTE-VCIMN 327
           I      ++PQ  N  +AE + +    + + L  TC   C+       D +K E VCI  
Sbjct: 6   IGKNNQTINPQ--NIAMAEQEVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDR 63

Query: 328 CVERFIDATTYITKRL 375
           CV ++ +A   +++ +
Sbjct: 64  CVSKYFEANQSLSQHM 79


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 535 QKKLRDWQEKEAKKFFEMTRKKQH--FEGTERTCNQTILSLSKIVSESILSLLNTEEIVQ 708
           QK+ R  + K+A    E+ RK QH  F+  E+T  +  L    I  ES ++ L  +E+ Q
Sbjct: 457 QKRRRKNEHKDAGYVTELYRKNQHLLFQVKEKTNIEAFLREQIITLESSIATLR-QELAQ 515

Query: 709 KLQEN 723
             + N
Sbjct: 516 VTEIN 520


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +3

Query: 141 KSTFDYVRNRQRRSATGKLHSRRNTKTTFPGPCSRSHRYLLGHMYGKTINTARLED*SMY 320
           KS+  Y+    +  A G ++ +R     F  P     R +  H Y   + T   +     
Sbjct: 184 KSSVSYINQSSKLLAPGTINIKRLKDANFQAPSHSGIRCMSIHPYFPLLLTCGFDRTLRI 243

Query: 321 YELCGKV 341
           Y+L GKV
Sbjct: 244 YQLDGKV 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,654,331
Number of Sequences: 5004
Number of extensions: 75935
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)