Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_E15
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0394 + 8531930-8531946,8532084-8532245,8532865-8533070,853... 61 1e-09
08_02_1396 - 26742694-26742915,26743736-26743771 50 2e-06
02_05_0323 - 27928385-27928534,27930326-27930430 44 2e-04
12_01_0183 - 1350451-1350477,1350887-1350969,1350977-1352696,135... 42 5e-04
11_01_0184 - 1444246-1444434,1446291-1446719 41 0.001
05_01_0002 - 8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,9... 31 1.6
02_05_0232 + 27041793-27042087,27042822-27042943,27043098-270432... 30 2.1
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 29 5.0
05_04_0310 + 20114415-20117819 29 5.0
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 29 6.6
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512... 29 6.6
05_03_0533 + 15117535-15118248 28 8.7
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144... 28 8.7
>09_02_0394 +
8531930-8531946,8532084-8532245,8532865-8533070,
8533174-8533304,8533496-8533623,8534191-8534430,
8535112-8535358
Length = 376
Score = 60.9 bits (141), Expect = 1e-09
Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 19/162 (11%)
Frame = +1
Query: 436 MFSNIKNFLNRHRRKFFVTGAVVGGLYV----LTSYAQKKLRDWQEKEAKKFFEMTRKKQ 603
M ++ + F RHRRK V+ V G Y L S+ ++ +R Q ++ E K Q
Sbjct: 1 MLASARGFWGRHRRKILVSLGVAGAGYAAYRYLDSHRRQLVRVEQRALEERAAEEIIKNQ 60
Query: 604 ---HFEGTERTCNQTILSL------SKIVSESILSLLNTEEIVQKLQEN------PEDKL 738
HFE ++ + T L S+I+ E +S L TE+++ E+ P++K
Sbjct: 61 LQTHFENVQKISDTTTLPFAMHYLRSRIMEELDISHL-TEKLMHGKGESSAPALTPKEKY 119
Query: 739 ALWEQLKITIFTRICVLVYGLCMLQVALRVQLNVXGGYLYKD 864
WE++KI FTR ++ + +L + +RVQ+ + G +LY D
Sbjct: 120 DTWEKIKILSFTRTVSSIWAMTLLSLYVRVQVTILGRHLYLD 161
>08_02_1396 - 26742694-26742915,26743736-26743771
Length = 85
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 178 DPQLENFILAETQKQRFQVLVHGLTDTCWDTCM-GKPSTRLDSKTEVCIMNCVERFIDAT 354
D L + E QK +V LT CWD C+ P ++ S C+ NC +RF+D +
Sbjct: 16 DSYLNITLQQEQQKAMVSEMVGKLTSVCWDKCITSTPGSKFSSGETTCLTNCAQRFLDMS 75
Query: 355 TYITKR 372
I KR
Sbjct: 76 VIIAKR 81
>02_05_0323 - 27928385-27928534,27930326-27930430
Length = 84
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +1
Query: 199 ILAETQKQRFQVLVHGLTDTCWDTCMGKPSTRLDSKTEVCIMNCVERFIDATTYITKRLM 378
I A+ + Q + + + C+ C+ KP + L CI CV+R+I+AT +++ L
Sbjct: 21 IKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVSRALF 80
Query: 379 STTK 390
S+T+
Sbjct: 81 SSTR 84
>12_01_0183 -
1350451-1350477,1350887-1350969,1350977-1352696,
1354258-1354428,1355892-1355939
Length = 682
Score = 42.3 bits (95), Expect = 5e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 178 DPQLENFILAETQKQRFQVLVHGLTDTCWDTCM-GKPSTRLDSKTEVCIMNCVERFID 348
+P+L+ + E +K V LTD CWD C+ G + + C+ NC +RF++
Sbjct: 8 NPRLQAMLEEEKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFLE 65
>11_01_0184 - 1444246-1444434,1446291-1446719
Length = 205
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 208 ETQKQRFQVLVHGLTDTCWDTCM-GKPSTRLDSKTEVCIMNCVERFIDATTYITKRLMS 381
E +K V LTD CWD C+ G + + C+ NC +RF + I +R+ S
Sbjct: 145 EKRKAMANEFVAKLTDVCWDKCITGSIGSSFSNSEASCLSNCAKRFFELKMLIVQRVSS 203
>05_01_0002 -
8097-8246,8384-8495,8572-8735,9367-9519,9603-9732,
9802-9902,10016-10651,10820-10899,11014-11673,
11787-12041,12154-12281,12515-12669,12735-12919,
13020-13049,13164-13239,13371-13504,13703-13994,
14400-14567,14647-14745,14843-15014,15103-15281
Length = 1352
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 580 FEMTRKKQHFEGTERTCNQTILSLSKIVSESILSLLNTEEIVQKLQEN---PEDKLALWE 750
F+ RK Q+ E R C L ++ I+++ EE+++K+Q+N P+ + + E
Sbjct: 478 FKHMRKNQYEESLFR-CEDDRFELDMLLESVIVAIKRVEELIEKMQDNSIKPDSPIRIDE 536
Query: 751 QL 756
L
Sbjct: 537 HL 538
>02_05_0232 +
27041793-27042087,27042822-27042943,27043098-27043219,
27043601-27043705,27043828-27044257,27044356-27044517,
27044565-27045260,27045349-27046128,27046441-27046654,
27047621-27047981,27047993-27048140,27048276-27048419,
27048784-27048888,27049749-27049794,27050089-27050255,
27050338-27050490,27050654-27050950,27051053-27051220,
27051298-27051363,27051451-27051927,27052031-27052768,
27052935-27053120
Length = 1993
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 538 KKLRDWQEKEA--KKFFEMTRKKQ--HFEGTERTCNQTILSLSKIVSESILSLLNTEEIV 705
K+L + +KE +K E +KQ E TER CN L + + ++ + E+
Sbjct: 414 KELENLYQKEVMHRKITEEALEKQIQETEETERHCNALYDKLHDVEEQKLMVEQHITEME 473
Query: 706 QKLQENPEDKLALWEQLKITIFTRI 780
L+E ED+L E+ K T+ RI
Sbjct: 474 AVLKER-EDRLHDVEEQKFTVEQRI 497
>06_03_1333 - 29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 723 ILLQFLYNLLCV*QTQNTFRYNFRK*KYCLVACSLSAFKMLFFASH 586
+ +Q L N+L + +NT RY F K + CS S ++ +SH
Sbjct: 1100 LCMQDLSNVLLQDKAENTVRYQFPVEKLRIFNCSCSGKELTLLSSH 1145
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -3
Query: 776 LVKIVIFNCSHSANLSSGFSCSFCTISSVFSKLKILSDTILESESIVWLHVLSVPSK 606
L K+ I NC+ +L SGF S + + K +LS + + W + S+P K
Sbjct: 1076 LRKLSIMNCTGLESLPSGFPSSLQVVHLIGCKPTLLSQ-LQNKDGPEWDKIASIPMK 1131
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 505 GGLYVLTSYAQKKLRDWQEKEAKKFFEMTRKKQHFEGTER 624
GG YVLT + E A+K RK H GT++
Sbjct: 857 GGYYVLTMTTSPEFEQEVENLARKLSPNARKVYHLSGTQK 896
>03_06_0514 +
34450178-34450244,34450821-34451047,34451140-34451275,
34451818-34451951,34452037-34452142,34452602-34452687,
34453204-34453365,34453918-34454034,34454222-34454464
Length = 425
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +1
Query: 160 SETDNVDPQLENFILAETQKQRFQVLVHGLT-DTCWDTCMGKP--STRLDSKTEVCIMNC 330
++ D V LEN E ++ F+V H T D+ + K + SK + C
Sbjct: 283 ADLDEVHEMLENDGYCEDERATFEVSFHSWTGQQVSDSILVKKHGDSAFQSKDFATAVEC 342
Query: 331 VERFIDATTYITKRLMSTTKY 393
RFID ++ +++ +
Sbjct: 343 YSRFIDTGVMVSPTMLARRSF 363
>05_03_0533 + 15117535-15118248
Length = 237
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 667 ESILSLLNTEEIVQKLQENPEDKLALWEQLKITIFTRICVLVYG-LC 804
E ++ +L E V+ Q++ E+ L WE+LK +F + YG LC
Sbjct: 163 ERLMEMLLEEGKVRD-QQDVEELLRCWERLKSPVFVELVCRFYGELC 208
>01_01_0171 +
1446221-1446902,1447040-1447221,1447339-1447409,
1447480-1447486,1447530-1447619,1447694-1447981,
1448121-1448333,1448860-1449087
Length = 586
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 595 KKQHFEGTERTCNQTILSLSKIVSESILSLLNTEEIVQKLQE 720
KK+H E E N+T SL +++ + L E ++K+Q+
Sbjct: 193 KKRHVEELESQYNETTASLERVMEQREQQLQAYNEEIRKMQD 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,627,507
Number of Sequences: 37544
Number of extensions: 417432
Number of successful extensions: 1002
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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