Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E14
         (779 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4B543 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_Q166P3 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_A4B543 Cluster: Putative uncharacterized protein; n=1;
           Alteromonas macleodii 'Deep ecotype'|Rep: Putative
           uncharacterized protein - Alteromonas macleodii 'Deep
           ecotype'
          Length = 535

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = -2

Query: 607 SIGTVVIILYIVLKLFNISKNQIKYLFHKLVTVFTNIINY 488
           S+ T +++LY  +  +NISK+++  LF   +T  T++I Y
Sbjct: 115 SVFTSLVVLYTFVLFYNISKHKLLSLFGAFLTAITHLIFY 154


>UniRef50_Q166P3 Cluster: Putative uncharacterized protein; n=1;
           Roseobacter denitrificans OCh 114|Rep: Putative
           uncharacterized protein - Roseobacter denitrificans
           (strain ATCC 33942 / OCh 114) (Erythrobactersp. (strain
           OCh 114)) (Roseobacter denitrificans)
          Length = 645

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 28/85 (32%), Positives = 38/85 (44%)
 Frame = -1

Query: 401 AIVTS*NYKYIN*VKYVSIKKLCSSF*IKNKESTYCSTI*LLL*SKCSFIIRVHTVRSSI 222
           AI TS    Y    KY+ + K  SS  I   E  Y S + +L  SKC F I  H++  S+
Sbjct: 145 AIKTSYTSSYFAYRKYLLLDKFFSSNEIIRLEGKY-SRLRMLDVSKCFFNIYTHSISWSL 203

Query: 221 STKKTCWKRT*QYSTTTFFICIIRH 147
             K    K    YS    F  +++H
Sbjct: 204 KDKDFSKKNAKNYSFEQQFDTLMQH 228


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,042,909
Number of Sequences: 1657284
Number of extensions: 10369647
Number of successful extensions: 21941
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21929
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)