Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E14
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.7  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 550 KNQIKYLFHKLVTVFTNIINYRFYNFKNMF 461
           K + K   HK+++  +N  NY   N+K ++
Sbjct: 71  KEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 550 KNQIKYLFHKLVTVFTNIINYRFYNFKNMF 461
           K + K   HK+++  +N  NY   N+K ++
Sbjct: 71  KEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 550 KNQIKYLFHKLVTVFTNIINYRFYNFKNMF 461
           K + K   HK+++  +N  NY   N+K ++
Sbjct: 71  KEREKSKEHKIISSLSNNYNYNNNNYKKLY 100


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 425 HNSGVLSSYPFIKHVFEIIESIIDD 499
           +N   L  +PF KH+ + + ++I +
Sbjct: 879 NNKYALKFFPFDKHILDKLPTLISN 903


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,851
Number of Sequences: 438
Number of extensions: 3226
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)