Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E13
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429...    30   2.0  
04_01_0288 + 3824337-3826385                                           29   3.5  
12_02_1233 + 27224219-27225607                                         29   6.0  
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974...    28   8.0  

>08_02_0685 +
           20039318-20040433,20040574-20040982,20042906-20042973,
           20043336-20043518,20043641-20043964,20045653-20045694
          Length = 713

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +3

Query: 546 ATAAYKIVEHLAQGEQQEVSASGESLSASKDMVETARVWARPVHTELEALANLKKILE 719
           A A  K V   A+      +A   S++ +KD+ E A  WA       EA A  K   E
Sbjct: 190 AVAVAKAVAEAAEAVAVPKAALEASMAVAKDLAEAAAKWAAEAKAAAEAAAEAKAAAE 247


>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 204 YRMLKDMVSHKILKTKSEISALTDFLDWLEKE 299
           +++ K   SH   KT +++S L  F DWL+ +
Sbjct: 395 HKITKATTSHHWFKTLNDLSTLVGFADWLDMQ 426


>12_02_1233 + 27224219-27225607
          Length = 462

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 75  IDEICQIAAYTPKQTYSQYIMPYGDLNPGARRRHNVRVVTVG-RYRMLK 218
           IDE+C  + + P  TYS Y    G L    +    +R+     RYR++K
Sbjct: 209 IDEVCSSSGWEPFDTYSVYFR--GSLYVHCQNNCVIRITIANHRYRIIK 255


>01_06_1760 -
           39697079-39697162,39697280-39697340,39697415-39697479,
           39697579-39697860,39697938-39698012,39698121-39698195,
           39698343-39698399,39698653-39698726,39698912-39699055,
           39699608-39699662,39700027-39700149,39700276-39700320,
           39701068-39701160,39701249-39701662
          Length = 548

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 721 LSRIFFRLASASSSVCTGL---AHTLAVSTMSLLAERLSPEALT 599
           +SR   +++  SS +CTG+      L +  +S++A +L+ E LT
Sbjct: 219 ISRNLLQVSEKSSQICTGVHCKCQQLLIGGISIMAGKLTAEQLT 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,723,195
Number of Sequences: 37544
Number of extensions: 407037
Number of successful extensions: 1208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)