Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E13
         (834 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   6.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   8.0  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   8.0  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = -3

Query: 742 LDGTVFCLSRIFF 704
           L+G+++C +R+FF
Sbjct: 3   LNGSLYCFARLFF 15


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 625 ERLSPEALTSCCSPCA 578
           +R  P+AL + CSPC+
Sbjct: 64  KRNLPDALENECSPCS 79


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 625 ERLSPEALTSCCSPCA 578
           +R  P+AL + CSPC+
Sbjct: 64  KRNLPDALENECSPCS 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,474
Number of Sequences: 438
Number of extensions: 4008
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)