Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_E11
(854 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 57 3e-09
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 28 1.5
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 2.6
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha... 27 2.6
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 27 3.4
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 27 3.4
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 27 4.5
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 5.9
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.9
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 26 5.9
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 7.8
SPAC1687.12c |coq4||ubiquinone biosynthesis protein Coq4|Schizos... 26 7.8
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 57.2 bits (132), Expect = 3e-09
Identities = 28/92 (30%), Positives = 49/92 (53%)
Frame = +2
Query: 434 RELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRF 613
++ Q+ L P + IV + Q+ TV EVGPG G +T ++ +A +K++ +E DPR
Sbjct: 26 KDFGQHILKNPLVAQGIVDKADLKQSDTVLEVGPGTGNLTVRMLEKA-RKVIAVEMDPRM 84
Query: 614 LPSLELLADACRDKVDVDIITGDILKTDLSQF 709
+ + + ++ GD++KTDL F
Sbjct: 85 AAEITKRVQGTPKEKKLQVVLGDVIKTDLPYF 116
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 1.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 506 QNHTVCEVGPGPGGITRSIIRQAPKKLVLIE 598
+ T+ E+G G G +T II PK+++ ++
Sbjct: 36 ETSTILELGAGSGKLTPRIIASQPKEIIAVD 66
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 2.6
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 687 KISPVIMSTSTLSRQASAKSSNDGKNRGSFSIKTSFL 577
K+SP I+ + SA+SS+ ++ S IKT FL
Sbjct: 549 KLSPSIIFVDEIDSLLSARSSDGNEHETSRRIKTEFL 585
>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 518 VCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 625
+ E+G G G T II PK+++ ++ P L L
Sbjct: 44 ILELGAGTGKFTPRIIASHPKEIIAVDVYPEMLDVL 79
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 3.4
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Frame = +2
Query: 431 LRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSI-IRQAPKKLVLIEKDP 607
L EL+ N R +D I R +++ VC VG GP G++ +I I+Q K +D
Sbjct: 71 LNELTDNL----RKLDTIER---EVEDVDVCIVGAGPAGLSAAIRIKQQAAK---ANRDI 120
Query: 608 RFLPSLELLADACRDKVDVDIITGDILKTDLSQFIPSDAKVHWLDPPP 751
R + LE A+ V +I T L + +P +W D PP
Sbjct: 121 RVV-VLEKAAEPGNHSVSGAVIQ----PTALDELLP-----NWRDDPP 158
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 478 QNSACLR*YSESYRL*SWTRPGWNN 552
+NSAC R Y E+ R SW+R NN
Sbjct: 100 RNSACDRYYQEALRKKSWSRSLSNN 124
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/81 (19%), Positives = 35/81 (43%)
Frame = +2
Query: 500 NIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSLELLADACRDKVDVDIITG 679
++ + T VG + R +A K+ + ++KD L++ D D++
Sbjct: 474 DLASRTHAYVGADLAAVVREAALRAIKRTISLQKDTS---GLDIFGAVQMD--DLEFALS 528
Query: 680 DILKTDLSQFIPSDAKVHWLD 742
+ ++ + +F+ VHW D
Sbjct: 529 SVRQSAMREFMMESPNVHWSD 549
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 116 STRSSAQAGRNSLYEINRREKSRTRSKITSD 208
S R A R++L + NR+ KS+ + ITSD
Sbjct: 31 SRRKGKSALRSALEKKNRKSKSKPKVTITSD 61
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 5.9
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +2
Query: 230 GLHDRSRSVGCLLVFYLRHQTGDVP*RFRRAPENTAVIMAVAKTALQIRLPPLPSIKDVI 409
G H S++V LV L H +G V + P N K L + + P+ + K +
Sbjct: 305 GSHFPSKTVPLALVIRLTHVSGKVRLLIKPPPSNRVWYAFYEKPRLHLIVEPMVARKQLT 364
Query: 410 KLYKL----RALRELSQNFLMEPRLID 478
Y + + L EL ++ P + D
Sbjct: 365 NNYLINFITQKLVELVHETIVMPNMND 391
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 189 VQKLQVISKRNRLTGFTIGAGVLGV----YLYSIFAIKQETFLDDFDEPPKI 332
+ L++ ++ T IGAG+ G+ L ++FA ++ FL ++PP+I
Sbjct: 246 ISSLKLDESLSQKTVAIIGAGMAGISCARQLTNLFAQYEQDFLSRGEKPPRI 297
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 292 RRRSLTISTSPRKYSSNHGRR*NCITDKAASTT 390
+ S + + SPR+ S HG R C++ A+S++
Sbjct: 498 KNHSKSNTLSPRRKGSRHGPREPCLSPDASSSS 530
>SPAC1687.12c |coq4||ubiquinone biosynthesis protein
Coq4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Frame = +2
Query: 614 LPSLELLADACRDKVDVDIITGDILKTDL---SQFI--PSDAKV--HWLDPPPPVHLIGN 772
LP L L K+ VD I + + D ++F+ P +A V + + H I N
Sbjct: 123 LPFLRTLPPNTLGKIYVDWIDKEHVGPDTRSPTRFVDDPEEAYVMQRYRESHDFYHAICN 182
Query: 773 LPFSVSTILIIRWLEMIS 826
+P ++ L I+WLE ++
Sbjct: 183 MPTNIEGELAIKWLEFVN 200
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,691
Number of Sequences: 5004
Number of extensions: 76666
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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