Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E11
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical pr...   126   2e-29
U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    48   9e-06
Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical pr...    43   2e-04
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    28   7.4  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    28   7.4  

>U88169-5|AAB42235.2|  367|Caenorhabditis elegans Hypothetical
           protein T03F1.7 protein.
          Length = 367

 Score =  126 bits (304), Expect = 2e-29
 Identities = 65/165 (39%), Positives = 104/165 (63%), Gaps = 5/165 (3%)
 Frame = +2

Query: 374 RLPPLPSIKDVIKLYKLRALRELSQNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGIT 553
           RLPPLP+++D I +Y+LRA + LSQN+LM+  +  KI + +  I+   V E+GPGPGGIT
Sbjct: 6   RLPPLPALRDFIHMYRLRAKKILSQNYLMDMNITRKIAKHAKVIEKDWVIEIGPGPGGIT 65

Query: 554 RSIIRQAPKKLVLIEKDPRFLPSLELLADACRDKVDVDIITGDILKTDLSQFIPSDA--- 724
           R+I+     +L ++E D RF+P L+ LA+A   ++ +     D L+T++     ++    
Sbjct: 66  RAILEAGASRLDVVEIDNRFIPPLQHLAEAADSRMFIH--HQDALRTEIGDIWKNETARP 123

Query: 725 -KVHWLDPP-PPVHLIGNLPFSVSTILIIRWLEMISKXEGPWLFG 853
             V W D   P +H+IGNLPF++++ LII++L  +S   G W +G
Sbjct: 124 ESVDWHDSNLPAMHVIGNLPFNIASPLIIKYLRDMSYRRGVWQYG 168


>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 20/63 (31%), Positives = 42/63 (66%)
 Frame = +3

Query: 132 LKQAEIAYMKLIEERNRERVQKLQVISKRNRLTGFTIGAGVLGVYLYSIFAIKQETFLDD 311
           L + +  + K  E+ N+ERV+++   + +N ++   +   V+G+Y Y+++++KQETFL++
Sbjct: 55  LPRPQKRFAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFLEE 114

Query: 312 FDE 320
            DE
Sbjct: 115 IDE 117


>Z47075-1|CAA87382.2|  308|Caenorhabditis elegans Hypothetical
           protein E02H1.1 protein.
          Length = 308

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = +2

Query: 446 QNFLMEPRLIDKIVRASGNIQNHTVCEVGPGPGGITRSIIRQAPKKLVLIEKDPRFLPSL 625
           Q+ L  P +++ IV  S      TV EVGPG G +T  ++  A K ++  E DPR +  +
Sbjct: 30  QHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVA-KTVIACEIDPRMIAEV 88

Query: 626 E--LLADACRDKVDVDIITGDILKTD 697
           +  ++    ++K+ V+   GD++K +
Sbjct: 89  KKRVMGTPLQNKLQVN--GGDVMKME 112


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +2

Query: 137 AGRNSLYEINRREKSRTRSKITSDFETQSTDGLHDRSRSVGCLLVFYLRHQTGDVP*RFR 316
           AGRN  Y+I    K R  S+IT++  T S            C L+F L H+  +     R
Sbjct: 365 AGRNITYQIKYTLKDRNSSQITNEL-TDSNLKCPKFECQWKCALIFNLPHRPREYKFEIR 423

Query: 317 RAPEN 331
              +N
Sbjct: 424 AKVDN 428


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 326 ENTAVIMAVAKTALQIRLPPL-PSIKDVIK 412
           EN AVI +  K   +I +PPL PS  DV+K
Sbjct: 360 ENKAVISSPKKEPEEIEVPPLPPSAPDVVK 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,601,569
Number of Sequences: 27780
Number of extensions: 422152
Number of successful extensions: 1081
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)