Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E10
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    29   0.83 
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    27   2.5  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    27   3.3  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    27   3.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   4.4  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    26   5.8  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   5.8  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   7.7  

>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = -2

Query: 307 LHYPDKL*HNCHSQXIVHRHKYLRSQLKVSFHQMTMNXRTIVARHXIFRIPFXLCIYSNR 128
           L+YP  L   C S   + R  +       SF  MT+   +  ++  +  I      Y N 
Sbjct: 151 LNYPYVLGPTCDSDIDLIREYFSFENGVCSFDNMTVKYVSTSSKSPVMYILDPA--YEND 208

Query: 127 YHFDYDHYDXALNXXRFTHI 68
            H D+  YD AL+    T+I
Sbjct: 209 RHSDFSRYDHALHDLLSTYI 228


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 313 LDETKKPISDDKKEVELLKRCYENPLFIPXSEVLKDEIXG-GGELMKSEAKKFENY 477
           LD+  KPI     E E   +C  + LF+   + L+ E+     E + S   +F+NY
Sbjct: 299 LDKAAKPIRSFLNEREDAYKCLVSLLFVDGEKGLRSELSQIPTENIDSTTDRFDNY 354


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 678 VYLLXLAQRHRTQLAQRQLHPFSQLFVAAKTEGSLQF 568
           VY + +AQ H T LA   +HP   LFVA    G L+F
Sbjct: 327 VYNITVAQ-HITSLA---VHPDGNLFVAGLENGELRF 359


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 510 RTXDRGSGAHSVPIDEPNSQIAKSPP 587
           R+  +GSGA+++P+   NS+I    P
Sbjct: 297 RSTKKGSGANAIPLSAQNSEIGHVNP 322


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 214  EKTPSIVIEDICGDEQCXVNDNYVITYPDSEGELDETKKPISDDKKEVELLK 369
            E   +++ E    +EQC      ++T    + ELD+  K ISD K E++ ++
Sbjct: 964  ENNATVLSEKAEFNEQCKSLQETIVT---KDAELDKLTKYISDYKTEIQEMR 1012


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 323 VSSNSPSLSG*VMT*LSFTXHCSSPQISSITIEGVFSPDDDE 198
           VSS+S S S        FT H S P +SS + +  FS    E
Sbjct: 117 VSSHSRSSSSWSAKLSRFTKHASKPSLSSNSSDSSFSKSGSE 158


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +1

Query: 496 NDFDIELXTGEAVPIVYLSTSRIAKL 573
           ND DIEL  GE+V   +LS + IAKL
Sbjct: 20  NDLDIEL--GESVVEPHLSNNSIAKL 43


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = -1

Query: 362 SSTSFLSSEIGFLVSSNSPSLSG*VMT*LSFTXHCSSPQISSI 234
           SS S ++S     +SSNS + S  +++ ++ + + S P ISSI
Sbjct: 800 SSQSSMNSSYSSPISSNSVTSSTSIISSIASSSYTSIPSISSI 842


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 146 QTKWNAENXMPGYDGPXIHRHLVK 217
           Q KWNA+     Y GP +  + +K
Sbjct: 41  QKKWNAKKETRSYHGPQLREYQLK 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,539
Number of Sequences: 5004
Number of extensions: 42504
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)