Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E05
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0817 - 6185881-6187074                                          120   1e-27
01_06_1372 + 36726129-36728240                                         31   0.87 
12_01_0242 + 1812891-1812897,1814073-1814830                           29   6.1  
09_03_0217 + 13532018-13532405,13532706-13533175                       28   8.1  
05_01_0135 + 908803-909059,913133-913187,913499-914047,914140-91...    28   8.1  

>06_01_0817 - 6185881-6187074
          Length = 397

 Score =  120 bits (289), Expect = 1e-27
 Identities = 73/217 (33%), Positives = 110/217 (50%), Gaps = 7/217 (3%)
 Frame = +3

Query: 126 WR*IDLXNITIMSNTANTI-GDVKKSENIHTLPPDHRFVEPQKAVKSITDMTIWEKSEAY 302
           +R I +  I   +NTA  +   V +   +    P   F  P K + S  D+  +  S   
Sbjct: 57  YRPIRMPAINAPTNTAAIVLSPVPQPLPVPPASPPFAFQVPAKRITSPDDIARFHASVHG 116

Query: 303 MEYTGFVATLNESIKGKPLT--VDCKVSDNVKKIINMLDKIDRIIDEFPPVEQPQRFGNA 476
             + GFVA L+ S+ G+ L+  +    S  V  ++ ++  +   +   PP+    R+GN 
Sbjct: 117 RHFLGFVAALSASVHGRKLSDPLPSPPSPVVSALLELISALSAFVASTPPLPHNSRYGNP 176

Query: 477 AFREWFENVKTNSTQLLQEAL----QPELHLAIPEIKVYLQESFGNATRIDYGTGHEMAF 644
           AFR W E +  ++ QL+   +     P+L  A  E+  YL +SFGNATRIDYGTGHE  F
Sbjct: 177 AFRLWHEKLSDSANQLIAPIMATAGSPDLAGAEAELAPYLLDSFGNATRIDYGTGHETNF 236

Query: 645 VMFLCCLYKIGFLQLEDNVATVLIIFNKYLNIARRLQ 755
             FL CL ++G +   D  A VL +F  YL++ R LQ
Sbjct: 237 AAFLYCLARLGLITEADYPAVVLRVFAAYLDLMRTLQ 273



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 19/28 (67%), Positives = 24/28 (85%)
 Frame = +1

Query: 760 TYRMEPAGSHGVWSLXDYQFIPFIWGSS 843
           TY +EPAGSHGVW L DY F+PFI+G++
Sbjct: 275 TYLLEPAGSHGVWGLDDYHFLPFIFGAA 302


>01_06_1372 + 36726129-36728240
          Length = 703

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 266 NGF--NSFLWLNKAMVWRKSVDVFTLFHISNSICSVGHDCDVX*IYLSPLKQAC 111
           NGF   +F    +A V  K +DVF+   + N +C+VG   D   +Y    K  C
Sbjct: 417 NGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGC 470


>12_01_0242 + 1812891-1812897,1814073-1814830
          Length = 254

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
 Frame = +3

Query: 228 HRFVEPQKAVKSITDMTIWEKSEAYMEYTGFVATLNESIKGKPLTVDCKVSDNVKKIINM 407
           HRF + ++ V    ++  W+ SEA+  +    A    +  G+P  +     D     I+ 
Sbjct: 26  HRFCDNKRYVCMYKNIEQWDDSEAFDNFKNAKARFWANYHGQPSDISLPDPDMYIDKIDH 85

Query: 408 LDKID-RIIDEFPPVEQP-QRFGNAAFREWFENVKTNS--TQLLQEALQPELHLAIP-EI 572
             KID  +I +   V  P +R       +   +  T++   Q   ++   ++++  P E+
Sbjct: 86  NSKIDPELIADLKMVRLPFERDDELLPADGLGSTDTDNKCQQKQNQSGNWDIYVEKPTEV 145

Query: 573 KVYLQESFGNATRIDYGTGHE 635
             + Q+S  N   +D+GT HE
Sbjct: 146 NKWEQDSRSN---MDWGTKHE 163


>09_03_0217 + 13532018-13532405,13532706-13533175
          Length = 285

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 471 YQIFEVVPLEGTHQLFYQFYPTCL 400
           Y  F+++P++  H + Y F   CL
Sbjct: 150 YPTFDIIPIKSAHNIVYHFAEICL 173


>05_01_0135 +
           908803-909059,913133-913187,913499-914047,914140-914365,
           914446-914906
          Length = 515

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 448 WNNLKDLVMLHSENGLKM*RQIPHSYFKKHYSQNYIWR 561
           W+ L+  V +  E+ +   +QI   Y+  +Y Q YIWR
Sbjct: 90  WSRLQLQVHIGEESLMDRRKQIYLQYYFSYYYQYYIWR 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,018,159
Number of Sequences: 37544
Number of extensions: 430772
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)