Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E04
         (537 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8KBR6 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_A0D879 Cluster: Chromosome undetermined scaffold_40, wh...    34   2.4  

>UniRef50_Q8KBR6 Cluster: Putative uncharacterized protein; n=1;
           Chlorobaculum tepidum|Rep: Putative uncharacterized
           protein - Chlorobium tepidum
          Length = 114

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = -3

Query: 238 SHQHHQTKNLHSSPLSAVFIFCMQXSLLQPLV 143
           SH HHQTKNL  S +   FIF +   LLQP+V
Sbjct: 2   SH-HHQTKNLGLSIVINAFIFMVIHQLLQPIV 32


>UniRef50_A0D879 Cluster: Chromosome undetermined scaffold_40, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_40,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 314

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 253 GILQPSHQHHQTKNLHSSPLSAVFIFCMQXSLLQPLVEYSASQELHW---SMKFTKVTSA 83
           G+LQ   + HQ   + ++ L+   +FC+   +L+   ++   Q   W   SM + ++ +A
Sbjct: 198 GLLQQGDKEHQYGKIDNATLNKTDVFCLGLMILELASQFPTQQYYDWEAKSMNYQQIMNA 257

Query: 82  ILXI-HRG*KTI 50
           I  + +RG  T+
Sbjct: 258 IQFLPNRGYSTV 269


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,286,917
Number of Sequences: 1657284
Number of extensions: 7217769
Number of successful extensions: 13241
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13232
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)