Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E04
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    28   0.77 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    25   5.4  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    25   5.4  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -3

Query: 259 HHGILQ-PSHQHHQTKNLHSSPLSAVFIFCMQXSLLQPLVEYSASQELHWSMKFTKVTSA 83
           HHG L  PSH+H  T +   S   A  IF     L  P    S S  + +  KF   +++
Sbjct: 48  HHGFLSSPSHKHPTTASASDSD-EATEIFTHSQPLPIPAGPSSKSHAIDFKFKFPSKSAS 106

Query: 82  IL 77
            L
Sbjct: 107 SL 108


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 326 PFYVNF*IKKAYPYSLFYYKTVASRYP 246
           P Y+N  +K+ +P +  YYK +A+  P
Sbjct: 365 PDYLNGLMKRLFPLAELYYKRMATDVP 391


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 259 HHGILQPSHQHHQTKNLHSSP 197
           H G+L P HQH    ++ +SP
Sbjct: 16  HPGLLTPDHQHAAILSVQNSP 36


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
 Frame = -2

Query: 305 IKKAYPYSLFYYKTVASRYPPAQSSASSNKKLAFFSIISSLHFLHAXI---PVTTISRIF 135
           I   Y YS+   KT+     P +  +   + +   +   +L+ LH  +    +++ S ++
Sbjct: 51  ISTEYNYSVDLKKTLNEIIMPIEGQSMEREAIGICTCFKTLNQLHTKLYQQMISSGSPVY 110

Query: 134 CLS-GTALVHEVYQSDFSYSXNSSGVKNYRKSTINQLXFEPSS 9
            LS       +VY     Y+ N SG+     S I ++  +PSS
Sbjct: 111 SLSQSLPAFRDVYH---MYTINLSGI-----SAIEKIISDPSS 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,809,370
Number of Sequences: 5004
Number of extensions: 33677
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)