Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_E04
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748...    29   2.3  
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342...    27   9.5  

>01_02_0053 +
           10673264-10674510,10674552-10674576,10674802-10674886,
           10675074-10675084
          Length = 455

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 290 PYSLFYYKTVASRYPPAQSSAS-SNKKLAFFSIISSLHFLHAXIPVTTISRIFCLSGT 120
           P  L  Y T+ S  PP    AS S   L+F    S  H LH+ +  + ++++  +S T
Sbjct: 85  PTFLRRYPTLLSVSPPPNPVASPSPHLLSFLEFASRHHALHSPLLASRLAKLLMISST 142


>08_01_0387 -
           3426058-3426168,3426279-3426473,3426612-3426724,
           3427121-3427157,3427270-3427341,3427849-3427962,
           3428129-3428200,3428343-3428381,3429340-3429414,
           3429561-3429674,3429749-3429813,3429927-3430047,
           3430942-3431063,3431547-3431634
          Length = 445

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 193 IMEKNASFLFDDADDWAGGYR 255
           +++K  S  FDDADD  G YR
Sbjct: 369 LLDKKTSSEFDDADDEVGRYR 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,761,746
Number of Sequences: 37544
Number of extensions: 184439
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)