Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D24
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.86 
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   4.6  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    26   8.1  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   8.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   8.1  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   8.1  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 345 LRESHQYYRAVVRMHLVLL 401
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 5/95 (5%)
 Frame = +3

Query: 483 SIENGVQAKSDGSHKYLSITQGPLPSYAH-----TPGTTIELTCEAAGSPAPSVHWFKND 647
           S +N    K+D S +    T     +Y++     T  T  + T E   S +       N 
Sbjct: 244 STQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNT 303

Query: 648 SPVYEYDVESNELIDSSPTSIARISSTLIVTRTTS 752
           SP     + S+  I  SP+     SST  +T  ++
Sbjct: 304 SPQISSTISSSSFIVESPSVALSTSSTTTITNAST 338


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 573 PGTTIELTCEAAGSPAPSVHWFKNDSP 653
           PG T + TC   GS   +V++ KN  P
Sbjct: 427 PGCTYDNTCSQRGSVIANVYFAKNKQP 453


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 432 QSAHLNKHIKLLSDIDNSIENGVQAKSDGSHKYLSITQ 545
           Q AH+N+    +SD+DNS    V+   +G+   +S+ +
Sbjct: 47  QCAHMNRRPAWISDLDNSSLEVVRHLGEGNGGAVSLVK 84


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = +3

Query: 525 KYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPT 704
           K+L +    +    +TPG T ++      +P PS +           +  ++ +  ++ T
Sbjct: 8   KFLLLVTAVMAQTEYTPGFTTDVATTVTPTPLPSANVTTTSFSSASTETSTHSVTSTNIT 67

Query: 705 SIARISSTLIVTRTTS 752
           SI    ST   + TT+
Sbjct: 68  SIVPPPSTSHNSTTTT 83


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
 Frame = +3

Query: 477 DNSIENGVQAKSDGSHKYLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVH-----WFK 641
           DN +EN +   S      +S T  P P  +  P +   ++ E    P    +        
Sbjct: 166 DNDVENRIHVSSASKVASISNTSKPNPIVSENPISATSVSIEIPIKPKELSNNLPFPRLN 225

Query: 642 NDSPVYEYDVESNELIDSSPTSIARISSTLIVTRTTSQDVYTWPRHHELQ 791
           N++     D  + E  DS+  + + +SS +      S D  TWP  + LQ
Sbjct: 226 NNNTNNNNDNNAIEKRDSASPTPSSVSSQI------SIDFSTWPHQNLLQ 269


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -3

Query: 208 NIFVTNSNGGQLHAFQKLEHKFEIRMHVCDPDRSI 104
           ++++ +   G LH+   +E+KF +  + C P  SI
Sbjct: 792 DLYINSPQCGTLHS--GVEYKFNVSAYACQPSTSI 824


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,676
Number of Sequences: 5004
Number of extensions: 62785
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)