Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_D23
(351 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9; Poaceae... 69 2e-11
UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=... 66 2e-10
UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, wh... 64 6e-10
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh... 64 6e-10
UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130, w... 64 6e-10
UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113; ... 64 6e-10
UniRef50_UPI0001509BE0 Cluster: hypothetical protein TTHERM_0052... 56 2e-07
UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1; Tetr... 56 2e-07
UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1; ... 46 2e-04
UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S riboso... 44 5e-04
UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1; N... 43 0.002
UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10; Archa... 42 0.002
UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1; Encepha... 41 0.007
UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;... 40 0.012
UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome sh... 38 0.036
UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum... 38 0.036
UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19; Archa... 38 0.036
UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2; Thermoprote... 36 0.14
UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529... 35 0.33
UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n... 34 0.58
UniRef50_Q8PYQ5 Cluster: 50S ribosomal protein L39e; n=19; Archa... 33 1.3
UniRef50_Q387Z5 Cluster: Putative uncharacterized protein; n=4; ... 31 5.4
UniRef50_Q23J90 Cluster: Putative uncharacterized protein; n=1; ... 31 5.4
>UniRef50_P51425 Cluster: 60S ribosomal protein L39; n=9;
Poaceae|Rep: 60S ribosomal protein L39 - Zea mays
(Maize)
Length = 51
Score = 68.9 bits (161), Expect = 2e-11
Identities = 28/31 (90%), Positives = 29/31 (93%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 190
QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct: 19 QNRPIPYWIRMRTDNTIRYNAKRRHWRRTKL 49
>UniRef50_Q4N5K7 Cluster: 60S ribosomal protein L39, putative; n=1;
Theileria parva|Rep: 60S ribosomal protein L39, putative
- Theileria parva
Length = 79
Score = 65.7 bits (153), Expect = 2e-10
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
QNRPIP W R++TGN IRYNAKRR+WRRTKLK+
Sbjct: 47 QNRPIPHWFRLKTGNKIRYNAKRRYWRRTKLKV 79
>UniRef50_A0DH83 Cluster: Chromosome undetermined scaffold_50, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_50,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 93
Score = 64.1 bits (149), Expect = 6e-10
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
QNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 60 QNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 92
>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_38,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 131
Score = 64.1 bits (149), Expect = 6e-10
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
QNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 98 QNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 130
>UniRef50_A0BVU9 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_130,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 137
Score = 64.1 bits (149), Expect = 6e-10
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
QNRP+P W R RT NTIRYN+KRRHWRRTKL +
Sbjct: 104 QNRPLPNWFRYRTDNTIRYNSKRRHWRRTKLNI 136
>UniRef50_Q96EH5 Cluster: 60S ribosomal protein L39-like; n=113;
Eukaryota|Rep: 60S ribosomal protein L39-like - Homo
sapiens (Human)
Length = 51
Score = 64.1 bits (149), Expect = 6e-10
Identities = 25/33 (75%), Positives = 30/33 (90%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
QNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 19 QNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>UniRef50_UPI0001509BE0 Cluster: hypothetical protein
TTHERM_00526400; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00526400 - Tetrahymena
thermophila SB210
Length = 121
Score = 56.0 bits (129), Expect = 2e-07
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
QNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 88 QNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 120
>UniRef50_UPI00006CB3D9 Cluster: Ribosomal L39 protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal L39 protein
- Tetrahymena thermophila SB210
Length = 89
Score = 56.0 bits (129), Expect = 2e-07
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
QNRP+P W R ++ IRYN+KRR+WRRTKLK+
Sbjct: 56 QNRPLPNWYRYKSDTNIRYNSKRRNWRRTKLKI 88
>UniRef50_Q16VX1 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 45.6 bits (103), Expect = 2e-04
Identities = 23/43 (53%), Positives = 30/43 (69%)
Frame = +1
Query: 73 AQIGQKAETKQTHSSVGKDAHRKHYSI*R*EASLEKDKAQVVS 201
A+ QKAE KQTHS+V ++AH KHY + R SLE +A+ VS
Sbjct: 110 AEACQKAEAKQTHSTVDQNAHWKHYPLQRQAPSLETYEAEAVS 152
>UniRef50_UPI0000D99F63 Cluster: PREDICTED: similar to 60S ribosomal
protein L39; n=2; Catarrhini|Rep: PREDICTED: similar to
60S ribosomal protein L39 - Macaca mulatta
Length = 102
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/22 (72%), Positives = 21/22 (95%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAK 163
QNRPIPQW++M+TG+ IRYN+K
Sbjct: 19 QNRPIPQWIQMKTGDKIRYNSK 40
>UniRef50_A1CZG2 Cluster: Ribosomal protein L39, putative; n=1;
Neosartorya fischeri NRRL 181|Rep: Ribosomal protein
L39, putative - Neosartorya fischeri (strain ATCC 1020 /
DSM 3700 / NRRL 181)(Aspergillus fischerianus (strain
ATCC 1020 / DSM 3700 / NRRL 181))
Length = 69
Score = 42.7 bits (96), Expect = 0.002
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIR 151
QNRPIPQW+R+RTGNTIR
Sbjct: 52 QNRPIPQWIRLRTGNTIR 69
>UniRef50_P13005 Cluster: 50S ribosomal protein L39e; n=10;
Archaea|Rep: 50S ribosomal protein L39e - Sulfolobus
acidocaldarius
Length = 51
Score = 42.3 bits (95), Expect = 0.002
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
+N PIP WV ++T IR+N RR+WRR LK+
Sbjct: 19 RNSPIPAWVIIKTQAEIRFNPLRRNWRRNNLKV 51
>UniRef50_Q8SQP8 Cluster: 60S ribosomal protein L39; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L39
- Encephalitozoon cuniculi
Length = 52
Score = 40.7 bits (91), Expect = 0.007
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
+NR IP W RM + YN RRHWR KLK+
Sbjct: 19 RNREIPAWKRMMKEHKGEYNRARRHWRSKKLKI 51
>UniRef50_UPI00015BAD96 Cluster: LSU ribosomal protein L39E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L39E - Ignicoccus hospitalis KIN4/I
Length = 55
Score = 39.9 bits (89), Expect = 0.012
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 193
QNR +P WV ++T + N RR+WRR K+K
Sbjct: 22 QNRALPAWVILKTRRRVTRNPMRRYWRRQKIK 53
>UniRef50_Q4RTC8 Cluster: Chromosome 1 SCAF14998, whole genome
shotgun sequence; n=6; Fungi/Metazoa group|Rep:
Chromosome 1 SCAF14998, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 503
Score = 38.3 bits (85), Expect = 0.036
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTI 148
QNRPIPQW+RM+TGN I
Sbjct: 446 QNRPIPQWIRMKTGNKI 462
>UniRef50_A7D3F5 Cluster: Ribosomal protein L39e; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L39e -
Halorubrum lacusprofundi ATCC 49239
Length = 64
Score = 38.3 bits (85), Expect = 0.036
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 190
QN +P WV M+T + N KRR+WRR L
Sbjct: 32 QNTRVPAWVMMKTDMNVTRNPKRRNWRRNDL 62
>UniRef50_P54056 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanococcus
jannaschii
Length = 51
Score = 38.3 bits (85), Expect = 0.036
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLK 193
QNR +P +V ++T +R++ K R+WRR KLK
Sbjct: 19 QNRRVPLFVIVKTRGRVRFHPKMRYWRRKKLK 50
>UniRef50_A0RW53 Cluster: Ribosomal protein L39; n=2;
Thermoprotei|Rep: Ribosomal protein L39 - Cenarchaeum
symbiosum
Length = 52
Score = 36.3 bits (80), Expect = 0.14
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
Q P+P W+ ++T +R N KRR WR T +++
Sbjct: 19 QAAPVPAWIILKTRRGVRTNPKRRAWRSTDVEV 51
>UniRef50_O58265 Cluster: Putative uncharacterized protein PH0529;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH0529 - Pyrococcus horikoshii
Length = 174
Score = 35.1 bits (77), Expect = 0.33
Identities = 23/55 (41%), Positives = 30/55 (54%)
Frame = -1
Query: 240 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFLANL 76
Y +F L HS ++LSFVLLQ L + + V +T G LFCF LA+L
Sbjct: 104 YNLFSGLDHPHSP-HSLSFVLLQCLLFGCVKTLLFVLTITQTGTLLFCFMALASL 157
>UniRef50_Q01CG7 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 567
Score = 34.3 bits (75), Expect = 0.58
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 152 YNAKRRHWRRTKL 190
YNAKRRHWRRTKL
Sbjct: 4 YNAKRRHWRRTKL 16
>UniRef50_Q8PYQ5 Cluster: 50S ribosomal protein L39e; n=19;
Archaea|Rep: 50S ribosomal protein L39e - Methanosarcina
mazei (Methanosarcina frisia)
Length = 51
Score = 33.1 bits (72), Expect = 1.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 98 QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 190
QN +P W ++T + + +RRHWRR L
Sbjct: 18 QNSRVPVWAIVKTNRKVVSHPRRRHWRRGSL 48
>UniRef50_Q387Z5 Cluster: Putative uncharacterized protein; n=4;
Trypanosoma|Rep: Putative uncharacterized protein -
Trypanosoma brucei
Length = 877
Score = 31.1 bits (67), Expect = 5.4
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = -1
Query: 216 LTHSQAYNLSFVLLQ*RLLALYRIVFPVRILTH*GMGLFCFSFLANLRVNNKRLMGRH 43
+ HS+ +N+ FVL + RLL L I F +G F F+++ R + + +GRH
Sbjct: 126 IQHSRTHNILFVLCEHRLLVLNSITFEHIYTVSDYVGTF---FVSDSRQTSSQRVGRH 180
>UniRef50_Q23J90 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 2075
Score = 31.1 bits (67), Expect = 5.4
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = -2
Query: 143 CFLCASLPTEEWVCFVSAFWPICALIINV 57
C LC+ + W+ FW +C+++I +
Sbjct: 1670 CALCSKMQYNSWIIVALTFWTLCSMLIAI 1698
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,957,051
Number of Sequences: 1657284
Number of extensions: 3739739
Number of successful extensions: 8653
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8652
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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