Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D23
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces...    69   2e-13
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    28   0.49 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   0.85 
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   1.5  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   4.5  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    24   6.0  

>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 51

 Score = 69.3 bits (162), Expect = 2e-13
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 98  QNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 196
           QNRPIPQW+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 19  QNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 208 FTSLQLELCPSPVTPLSVISNSVSCAHPYPL 116
           ++S+ L    +P TP S  +N V CA P PL
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSPL 362


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 0.85
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 178  SPVTPLSVISNSVSCAHPYPLRNGS 104
            +P TP++V S++V+ AH Y    GS
Sbjct: 982  NPYTPIAVASSTVNPAHTYKPHGGS 1006


>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 123

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 128 SLPTEEWVCFVSAFWPICALIINVLWADILNN 33
           S PT + +  ++A +  C LI +++W D L N
Sbjct: 41  SYPTNKVLSELAALFESCNLIFDLIWFDDLQN 72


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 116 EEWVCFVSAFWPICALIINVLWADILNNQVVK 21
           E W     A   + + +IN  W   LN Q+V+
Sbjct: 22  EYWPSVAPAATELISKLINAFWCQTLNGQLVE 53


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -1

Query: 240 YRVFIRLHLTHSQAYNLSFVLLQ*RLLALYRIV 142
           YRVFI LHL    A   +FVL +  L  +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,009,699
Number of Sequences: 5004
Number of extensions: 16335
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)