Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D23
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.9  
SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)                      26   9.9  

>SB_24715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 184 CPSPVTPLSVISNSVSCAH 128
           CPSP TP S  SNS S A+
Sbjct: 40  CPSPTTPPSSRSNSSSSAY 58


>SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 220 TFNTFTSLQLELCPSPVTPLSVISNSVSCAHPYPL 116
           T + F      L P PV PL + S+  S  H +P+
Sbjct: 126 TLDEFPRCTGPLVPRPVRPLMLASDQFSSLHMFPM 160


>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = +2

Query: 113 PQWVRM-RTGNTIRYNAKRRHW 175
           P+W+   R GN I Y+  RR W
Sbjct: 646 PEWLDFPRAGNNISYHYARRQW 667


>SB_7982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 10  DDFVLTT*LFKMSAHKTFIINAQIGQKAETKQTHSSVGKDAHRKHYSI 153
           D   LT  L++ SA      +  IG +A      SS   DAH  HYS+
Sbjct: 191 DRISLTMKLYECSALDHQECSGAIGHQAFRSIIASSYYDDAHAPHYSV 238


>SB_53362| Best HMM Match : RHD (HMM E-Value=0.94)
          Length = 367

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 114 GMGLFCFSFLANLRVNNKR 58
           GMGLF +  +  LR N+KR
Sbjct: 163 GMGLFVYGIIDELRFNSKR 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,636,831
Number of Sequences: 59808
Number of extensions: 125758
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)