Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_D21
(837 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 237 2e-63
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch... 30 0.35
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 28 1.4
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 3.3
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 4.4
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 26 5.8
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 7.6
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 26 7.6
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 237 bits (579), Expect = 2e-63
Identities = 110/209 (52%), Positives = 149/209 (71%), Gaps = 5/209 (2%)
Frame = +3
Query: 189 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 368
++T+RILI+SD H+G+ E DPVRG DSF++F E+L +A + DVD+ILLGGD+F KPS
Sbjct: 15 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSR 74
Query: 369 NCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSRT----VNYEDPNLNISYPILSIHGNH 536
+++ +R CLGDKP +ELLSD T +NY DPN+N++ P+ SIHGNH
Sbjct: 75 KALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSIHGNH 134
Query: 537 DDPVGQGSVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRL 716
DDP G G S+LDIL +TGLVNYFG+ + ++ +SP+LLQKG T+LALYG+S+++D+RL
Sbjct: 135 DDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNVRDERL 194
Query: 717 SRLFAEKKVEMERPDETLD-WFNLFVLHQ 800
F E KV+ RPD D WFNL +HQ
Sbjct: 195 YHSFRENKVKFLRPDLYRDEWFNLLTVHQ 223
>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 30.3 bits (65), Expect = 0.35
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 347 KQITS*KYQINITLYRKRQNFFKSYKAIFSAYRIIFHETKMN 222
+ +T+ + + I L R+ + YK +FS YR+ F ++N
Sbjct: 28 RNVTNVYFSLRILLNRQNEGNNCKYKLVFSLYRVSFRRMRLN 69
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = -3
Query: 421 LSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSK-------AIKLS 263
L P Q R +S +N L A S S S+KSTS T + TS K ++ S
Sbjct: 134 LKPEQNTRPVS-EVNASLDLNTA-SRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQS 191
Query: 262 SPRTGSFSMKP 230
SP S S +P
Sbjct: 192 SPNLASLSKQP 202
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 90 PIGIIVFKLFEITS*SSCTSKIMIENDISAWSP--DDTLRILIASD 221
P+G++ KL IT + T+ +++EN IS+ SP D+ L L D
Sbjct: 386 PMGVLGEKLGNITDVEAYTNALLLENGISS-SPFSDEVLNCLPPDD 430
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -3
Query: 349 SNRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEM 170
++RSPP S K S C + SS+ + GS+ + E +L SS H+
Sbjct: 166 NHRSPPASCKRLSSCESSGSPSSRVV---GSLQGSYCPSGTHLHEGSLLLEDSSARHSSD 222
Query: 169 S 167
S
Sbjct: 223 S 223
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 177 AWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLG 335
+WSP L I +A +I+L E P R + I +V S+A + D++ +G
Sbjct: 198 SWSPKGDLAIGLAENIYLWSKELGPTRVLEESI--YDVSSVAYSYNGDILAVG 248
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 456 KNFSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 572
K ++ +N D ++ I P+L N DD +G+ + +L
Sbjct: 110 KVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNL 148
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
Frame = +3
Query: 600 NYFGKW--TDYTHVRISPVLL 656
NYFG TDY H+ ++P+LL
Sbjct: 168 NYFGNLDATDYPHLFLNPILL 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,916
Number of Sequences: 5004
Number of extensions: 72411
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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