Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_D21
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773... 219 2e-57
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454... 208 3e-54
03_06_0588 - 34924061-34924644,34924662-34925058 29 3.5
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 3.5
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 29 6.1
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 8.0
>04_04_1284 +
32376870-32376874,32376876-32376935,32377166-32377301,
32377439-32377596,32377791-32377881,32377975-32378094,
32378166-32378234,32378354-32378445,32378578-32378680,
32378761-32378868,32378949-32379011,32379073-32379144,
32379322-32379399,32379478-32379540,32379617-32379680,
32379817-32379902,32380456-32380569,32380760-32380837,
32381068-32381303,32381486-32381576,32381706-32381894,
32382082-32382117
Length = 703
Score = 219 bits (535), Expect = 2e-57
Identities = 108/216 (50%), Positives = 147/216 (68%), Gaps = 13/216 (6%)
Frame = +3
Query: 192 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVN 371
+TLR+L+A+D HLG+ME D +R DSF AFEE+ SLA Q VD +LLGGDLF + KPS +
Sbjct: 27 NTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQNKVDFVLLGGDLFHENKPSRS 86
Query: 372 CMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSR---TVNYEDPNLNISYPILSIHGNHDD 542
+ K EI+R+YCL D+PV +++SDQ NF VNYEDPN N+ P+ +IHGNHDD
Sbjct: 87 TLVKTIEILRRYCLNDQPVKFQVVSDQTINFPNRFGQVNYEDPNFNVGLPVFTIHGNHDD 146
Query: 543 PVGQGSVSSLDILSITGLVNYFGKW----TDYTHVRISPVLLQKGLTRLALYGLSHLKDQ 710
P G ++S++DILS LVNYFGK + + + PVL++KG T +ALYGL +++D+
Sbjct: 147 PAGVDNLSAIDILSACNLVNYFGKMDLGGSGVGEIAVYPVLVKKGTTFVALYGLGNIRDE 206
Query: 711 RLSRLF-AEKKVEMERPD-----ETLDWFNLFVLHQ 800
RL+R+F V+ RP+ DWFN+ VLHQ
Sbjct: 207 RLNRMFQTPHAVQWMRPETQDGMSVSDWFNILVLHQ 242
>08_01_0522 -
4545166-4545174,4545295-4545447,4545566-4545727,
4545821-4545895,4545974-4546087,4546257-4546339,
4546496-4546556,4546664-4546726,4546804-4546908,
4547454-4547525,4547602-4547664,4547746-4547853,
4547937-4548039,4548131-4548207,4548335-4548403,
4548488-4548607,4548749-4548839,4549020-4549177,
4549696-4549834,4551164-4551186
Length = 615
Score = 208 bits (509), Expect = 3e-54
Identities = 102/220 (46%), Positives = 143/220 (65%), Gaps = 10/220 (4%)
Frame = +3
Query: 174 SAWSPDDT--LRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLF 347
++W ++ LRIL+A+D HLG++E D +R DSF FEE+ SLAV VD ILLGG+LF
Sbjct: 6 ASWDEEENSMLRILVATDCHLGYLEKDEIRRFDSFDTFEEICSLAVINKVDFILLGGNLF 65
Query: 348 DQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNFSRTVNYEDPNLNISYPIL 518
+ KPS++ + K EIIR YCL D V +++SDQ ++N VN+EDPN NI P+
Sbjct: 66 HENKPSISTLVKSMEIIRSYCLNDHQVQFQVVSDQAACLQNRFGRVNFEDPNFNIGLPVF 125
Query: 519 SIHGNHDDPVGQGSVSSLDILSITGLVNYFGK----WTDYTHVRISPVLLQKGLTRLALY 686
++HG HD P G +S+ DILS VNYFGK +D + + PV ++KG T +ALY
Sbjct: 126 TVHGTHDGPAGVDGLSATDILSACNFVNYFGKVDPGSSDVDQISVCPVFIKKGATSVALY 185
Query: 687 GLSHLKDQRLSRLF-AEKKVEMERPDETLDWFNLFVLHQK 803
GL +++D++LSR+ K++ + D DWFNLFV HQK
Sbjct: 186 GLGNIRDEKLSRMLQTHYKIQWMKADSEDDWFNLFVFHQK 225
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 162 ENDISAWSPD--DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 317
END AW PD + A + L F + V S IA +V L +CDV
Sbjct: 52 ENDFIAWHPDKHGIFSVRSAYSLALDFSRTE-VSSSSSSIAMSKVWKLVWKCDV 104
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = -3
Query: 448 SDSNSILTGLSPRQYLRIISVHLNIQLTEGLA*SNRSPPKSIKSTSHCTARDKTSSKAIK 269
S S++ L G+SPR+ L + NI TE +R+ P S+ S T R S A
Sbjct: 552 STSSASLRGMSPRRRLASDGISKNITFTEK---DDRTMPSSVASQEISTIRRLPSDGADS 608
Query: 268 LS 263
+S
Sbjct: 609 IS 610
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 393 IIRKYCLGDKPVSIELLSDQIKNFSRTVNYEDPN-LNISYPILSIHGNHD 539
+ R+ G K ++ + D NFS + ++DP L + ++IH +H+
Sbjct: 223 VYRRIFKGGKTIAADNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHE 272
>09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 28.3 bits (60), Expect = 8.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 709 RDFHVFLLKKKWKWRDPMK 765
R H +LL+ KWKW+ P K
Sbjct: 997 RSHHQWLLQFKWKWQKPWK 1015
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,794,762
Number of Sequences: 37544
Number of extensions: 407855
Number of successful extensions: 962
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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