Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D21
         (837 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132144-1|AAD33591.1|  620|Drosophila melanogaster endo/exonucl...   261   1e-69
AE014134-2061|AAF53093.1|  620|Drosophila melanogaster CG16928-P...   261   1e-69
AF201919-1|AAF71697.1|   97|Drosophila melanogaster CRC-D protein.     31   2.6  
AE014296-3491|AAF51688.1|  523|Drosophila melanogaster CG10510-P...    31   2.6  
AE014134-3388|ABC65922.1|  105|Drosophila melanogaster CG8669-PD...    31   2.6  
AY058403-1|AAL13632.1|  523|Drosophila melanogaster GH17186p pro...    30   4.5  
BT030178-1|ABN49317.1|  217|Drosophila melanogaster IP17826p pro...    29   7.9  
BT030163-1|ABN49302.1|  217|Drosophila melanogaster IP17726p pro...    29   7.9  
AE013599-139|AAF57287.1|  683|Drosophila melanogaster CG7856-PA ...    29   7.9  

>AF132144-1|AAD33591.1|  620|Drosophila melanogaster
           endo/exonuclease Mre11 protein.
          Length = 620

 Score =  261 bits (639), Expect = 1e-69
 Identities = 128/220 (58%), Positives = 163/220 (74%), Gaps = 16/220 (7%)
 Frame = +3

Query: 189 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 368
           D+ +RIL+A+D HLG+ E D VRGEDSF AFEE+L LAV  DVD+ILLGGDLF  A PS 
Sbjct: 12  DNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDVDMILLGGDLFHDAVPSQ 71

Query: 369 NCMFKCTEIIRKYCLGDKPVSIELLSDQIKNF----SRTVNYEDPNLNISYPILSIHGNH 536
           N + KC E++R+Y  GD+PVS+E+LSDQ + F    +++VNYEDPNLNI+ P+ SIHGNH
Sbjct: 72  NALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSIHGNH 131

Query: 537 DDPVGQGSVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRL 716
           DDP G G +SSLD+LS +GLVNYFG+WTD T V ISPVL++KG ++LALYGLSH+ D RL
Sbjct: 132 DDPSGFGRLSSLDLLSTSGLVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRL 191

Query: 717 SRLFAEKKVEMERPD------------ETLDWFNLFVLHQ 800
           +RL  + KV+   P+            E  DWF+L V+HQ
Sbjct: 192 ARLIKDFKVKFNCPENVANGEDGNESKEEEDWFHLLVVHQ 231


>AE014134-2061|AAF53093.1|  620|Drosophila melanogaster CG16928-PA
           protein.
          Length = 620

 Score =  261 bits (639), Expect = 1e-69
 Identities = 128/220 (58%), Positives = 163/220 (74%), Gaps = 16/220 (7%)
 Frame = +3

Query: 189 DDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSV 368
           D+ +RIL+A+D HLG+ E D VRGEDSF AFEE+L LAV  DVD+ILLGGDLF  A PS 
Sbjct: 12  DNVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDVDMILLGGDLFHDAVPSQ 71

Query: 369 NCMFKCTEIIRKYCLGDKPVSIELLSDQIKNF----SRTVNYEDPNLNISYPILSIHGNH 536
           N + KC E++R+Y  GD+PVS+E+LSDQ + F    +++VNYEDPNLNI+ P+ SIHGNH
Sbjct: 72  NALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFSIHGNH 131

Query: 537 DDPVGQGSVSSLDILSITGLVNYFGKWTDYTHVRISPVLLQKGLTRLALYGLSHLKDQRL 716
           DDP G G +SSLD+LS +GLVNYFG+WTD T V ISPVL++KG ++LALYGLSH+ D RL
Sbjct: 132 DDPSGFGRLSSLDLLSTSGLVNYFGRWTDLTQVEISPVLMRKGESQLALYGLSHIHDGRL 191

Query: 717 SRLFAEKKVEMERPD------------ETLDWFNLFVLHQ 800
           +RL  + KV+   P+            E  DWF+L V+HQ
Sbjct: 192 ARLIKDFKVKFNCPENVANGEDGNESKEEEDWFHLLVVHQ 231


>AF201919-1|AAF71697.1|   97|Drosophila melanogaster CRC-D protein.
          Length = 97

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 258 GEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCT 389
           G+D  +  EEV SL +  D ++++   DL D+ +  + C+  CT
Sbjct: 54  GDDEALTLEEVASLQLLSDEEMVVEIFDLKDEGRYILVCLLFCT 97


>AE014296-3491|AAF51688.1|  523|Drosophila melanogaster CG10510-PA
           protein.
          Length = 523

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 23/107 (21%), Positives = 47/107 (43%)
 Frame = +3

Query: 150 KIMIENDISAWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLIL 329
           KI +  ++      + LRIL      L       V+  +  +A   +    +Q + + ++
Sbjct: 321 KIELNQEMDREITHEKLRILTGECYELTKQMEKHVKSGELLLALS-ITCRKLQTESEKVI 379

Query: 330 LGGDLFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSR 470
           LGG++FD+ +  V+  FK   +  K  +      +  L+  ++NF R
Sbjct: 380 LGGEVFDETEVDVDEYFKLQTLNLKDHVDMTEEELVELNKSLRNFWR 426


>AE014134-3388|ABC65922.1|  105|Drosophila melanogaster CG8669-PD,
           isoform D protein.
          Length = 105

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 258 GEDSFIAFEEVLSLAVQCDVDLILLGGDLFDQAKPSVNCMFKCT 389
           G+D  +  EEV SL +  D ++++   DL D+ +  + C+  CT
Sbjct: 62  GDDEALTLEEVASLQLLSDEEMVVEIFDLKDEGRYILVCLLFCT 105


>AY058403-1|AAL13632.1|  523|Drosophila melanogaster GH17186p
           protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 23/107 (21%), Positives = 47/107 (43%)
 Frame = +3

Query: 150 KIMIENDISAWSPDDTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDVDLIL 329
           KI +  ++      + LRIL      L       V+  +  +A   +    +Q + + ++
Sbjct: 321 KIELNQEMDREITHEKLRILTGECYELTKQMEKHVKSGELLLALS-ITCRKLQTESEKVI 379

Query: 330 LGGDLFDQAKPSVNCMFKCTEIIRKYCLGDKPVSIELLSDQIKNFSR 470
           LGG++FD+ +  V+  FK   +  K  +      +  L+  ++NF R
Sbjct: 380 LGGEVFDETEVDVDEYFKLQILNLKDHVDMTEEELVELNKSLRNFWR 426


>BT030178-1|ABN49317.1|  217|Drosophila melanogaster IP17826p
           protein.
          Length = 217

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 149 TCTTRL*CYLKQLKYNYADWR 87
           TC TRL   +KQL+ NYA W+
Sbjct: 43  TCKTRLETIVKQLQDNYAKWQ 63


>BT030163-1|ABN49302.1|  217|Drosophila melanogaster IP17726p
           protein.
          Length = 217

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 149 TCTTRL*CYLKQLKYNYADWR 87
           TC TRL   +KQL+ NYA W+
Sbjct: 43  TCKTRLETIVKQLQDNYAKWQ 63


>AE013599-139|AAF57287.1|  683|Drosophila melanogaster CG7856-PA
           protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 7.9
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 331 KSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEMSFSII 155
           K+ KS    TAR   S K+ + SSPR+ S   +   +   +   S  + D+ E +F+++
Sbjct: 387 KAPKSRKETTARSNLSRKSYRRSSPRSRSRGSRANALESPLQ-KSEDTPDNVEYAFALV 444


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,924,968
Number of Sequences: 53049
Number of extensions: 734452
Number of successful extensions: 1720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1716
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)