Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D20
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0149 - 20636801-20637044,20637859-20639180                       31   0.70 
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562...    29   2.1  
05_05_0200 - 23171803-23171906,23172304-23173951                       28   6.5  
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985...    28   6.5  

>11_06_0149 - 20636801-20637044,20637859-20639180
          Length = 521

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 121 TVF*SEMRTLCRQDKPTRRRSYEDGGLNEPKKNQKNTNNIS 243
           + F S +    R  KP+RRR    GG   PKK  K+ N ++
Sbjct: 3   SAFHSLLLPAIRNPKPSRRRGRGRGGSKRPKKTTKSKNRLA 43


>07_03_1706 +
           28855669-28855801,28856013-28856044,28856158-28856229,
           28856631-28856727,28857195-28857256,28857726-28858024,
           28858306-28858663,28858692-28859297,28859500-28859698,
           28860039-28860101,28860603-28860673
          Length = 663

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 157 QDKPTRRRSYEDGGLNEPKKNQKNTNNISKKP 252
           QD P +      GGL + K+  ++T+ IS KP
Sbjct: 79  QDAPKKTPKVNSGGLQKHKQTDRHTSRISTKP 110


>05_05_0200 - 23171803-23171906,23172304-23173951
          Length = 583

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -2

Query: 437 FNWNAQHVNYVTFYLHVVYIAVYC----FSLPIVCVRISN 330
           F WN Q + +   Y+H+    ++C    F   +  V I+N
Sbjct: 350 FGWNMQRLGFGNMYVHIATFMLFCLAPFFIFNLAAVNINN 389


>01_02_0089 -
           10997882-10997957,10998139-10998423,10998519-10998589,
           10998685-10998761,10998858-10998963,10999062-10999189,
           10999291-10999423,11000005-11000133,11000220-11000375,
           11000770-11000846,11000938-11000998,11001249-11001383,
           11001642-11001765,11001852-11001917,11002010-11002112,
           11002603-11002652,11003795-11003895
          Length = 625

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -1

Query: 423 PARKLCHILFACCVHCCLLFFIADRLRTNIQCCQPFKLFKCS 298
           PA  L  +L  CC  CC +  + ++L   I CC   K  KCS
Sbjct: 5   PAHALL-VLLLCC-SCCSVRHLLEQLARRIPCCWDAK--KCS 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,109,176
Number of Sequences: 37544
Number of extensions: 252756
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)