Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D18
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   150   3e-37
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    30   0.37 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   3.5  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    27   4.6  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    26   8.0  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  150 bits (363), Expect = 3e-37
 Identities = 70/172 (40%), Positives = 111/172 (64%)
 Frame = +2

Query: 326 NYPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWA 505
           N+ + L W + +L   L + A+YG  +F    + +T +FA I Y  SGLGITAG HRLW+
Sbjct: 57  NWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYAYSGLGITAGYHRLWS 114

Query: 506 HKSYKAKWPLRVILIIFNSLAFQDSALDWARDHRMHHKYSETDADPHNATRGFFFSHIGW 685
           H++YKAK PL   L    + AF+ S   W+RDHR HH+Y++TD DP+N  +GF+++H+GW
Sbjct: 115 HRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKDPYNVKKGFWYAHVGW 174

Query: 686 LLVRKHPELKRKGKGLDLSDLYADPILRFQKKYYLILMPIACFILPNSDSGV 841
           +++ ++P  +R G+  D+SDL +DP + F  +++L +     FI P+   G+
Sbjct: 175 MIILQNP--RRIGRS-DVSDLNSDPFVMFNHRHFLPIASFMAFIFPSLFCGL 223


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +2

Query: 371 YLHIAALYGGYLFLFHAKWQTDLFAYILYVMSGLGITAGAHRLWAHKSYKAKWPLRVILI 550
           Y+ +A L   ++ LF     T L   IL +++ LGI A  +  +AH      WP R++L 
Sbjct: 514 YILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCFAHGLQFINWP-RLLLP 572

Query: 551 IF 556
            F
Sbjct: 573 SF 574


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 329 YPKKLVWRNIILFTYLHIAALYGGYLFLFHAKWQTDLFAYILYVM 463
           Y KKL W  I+ F Y H   +   Y+ L H     ++F+   Y++
Sbjct: 440 YTKKL-WSLIVNFEYTHAPLIPDAYMKLLHLYEFPNIFSKYDYIL 483


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 280 YSRLRTVQHTCTASRQLPKETSLEEYNTFYIPSYCCVVWRLPF 408
           YSRL    H C  SR++  ET+ ++ N        C+ + L +
Sbjct: 329 YSRLLLFAHQCIPSREITFETTSKDGNLLNAIRIFCLYFDLDY 371


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = +2

Query: 302 STPVQQADNYPKK--LVWRNIIL---FTYLHIAALYGGYLFLFHAKWQTDLF 442
           S+P  Q  ++ K   +VW ++++   F+Y+  AA Y  +  L+   W+  L+
Sbjct: 64  SSPPPQTQSFLKTVLIVWFSLLVTSYFSYMPFAASYFSFTMLYIWSWKHPLY 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,805,076
Number of Sequences: 5004
Number of extensions: 86325
Number of successful extensions: 222
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)