Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D18
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258...    31   1.6  
12_01_0651 - 5507935-5509638                                           30   2.8  
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    29   6.4  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    28   8.4  
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    28   8.4  

>12_01_0335 -
           2583476-2583493,2583919-2583965,2584151-2584274,
           2584421-2584665,2585281-2585404,2585424-2585456
          Length = 196

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 725 CPFSSVLDVSSLEASQCERKRNLVWHYVGRHQSR 624
           CP   +  +  +EASQC+  R +  H  GRH SR
Sbjct: 108 CPDDFLSCLICMEASQCDDPRYIPKHKFGRHMSR 141


>12_01_0651 - 5507935-5509638
          Length = 567

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 728 PCPFSSVLDVSSLEASQCERKRNLVWHYVGRHQSRSIYDACDD 600
           PC F S L   +L    C++  N+ +HY   H  ++I   CD+
Sbjct: 502 PCEFKSSL---ALLVENCDKLMNISFHYPPGHDQKNIRVFCDN 541


>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 239 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII 361
           + D  G L        D  +   PV + DN+  K++WRNI+
Sbjct: 807 IMDTLGALALATEPPNDAMMKRPPVGRGDNFITKVMWRNIV 847


>06_03_1508 - 30653967-30654245,30654342-30654631,30654773-30654841,
            30654854-30654921,30655016-30655492,30655578-30655874,
            30655974-30656824,30656917-30656990,30657270-30657292,
            30657709-30657772,30658098-30658370,30658511-30658587,
            30658686-30658912
          Length = 1022

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +2

Query: 326  NYPKKLVWRNIILFTYLHIAALYGGYLF-LFHAKWQTDLFAYILYVMSGLGITAGAHRLW 502
            N P+  +W N ++   L       GY F +F       L++ +L V+  L  T      +
Sbjct: 892  NNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGSAQLWSALLPVVLTLIATQQKDTFF 951

Query: 503  AHKSYKAKWPLRVILI 550
            A+  Y  KW L   +I
Sbjct: 952  ANLCY-TKWALEGFVI 966


>05_05_0338 +
           24204301-24206262,24206337-24206495,24206864-24207035,
           24207544-24207842,24208301-24208355,24208438-24208487,
           24208522-24208827
          Length = 1000

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +2

Query: 239 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII---LFTYLHIAAL 391
           + D  G L        D  +   PV++ DN+  +++WRNI+   L+  L +A L
Sbjct: 780 IMDTLGALALATEPPNDEMMKRPPVRRGDNFITRIMWRNILGQGLYQLLVLATL 833


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,207,504
Number of Sequences: 37544
Number of extensions: 503630
Number of successful extensions: 1283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)