Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D17
         (340 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P38117 Cluster: Electron transfer flavoprotein subunit ...    38   0.033
UniRef50_Q9DCW4 Cluster: Electron transfer flavoprotein subunit ...    38   0.058
UniRef50_Q68FU3 Cluster: Electron transfer flavoprotein subunit ...    37   0.10 
UniRef50_Q8ZQL9 Cluster: Putative electron transfer flavoprotein...    35   0.31 
UniRef50_P38975 Cluster: Electron transfer flavoprotein subunit ...    34   0.54 

>UniRef50_P38117 Cluster: Electron transfer flavoprotein subunit
           beta; n=9; Eutheria|Rep: Electron transfer flavoprotein
           subunit beta - Homo sapiens (Human)
          Length = 255

 Score = 38.3 bits (85), Expect = 0.033
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +2

Query: 2   VVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV 97
           V+SVEDPP R AG  +   + LVAKLKE G +
Sbjct: 224 VISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 255


>UniRef50_Q9DCW4 Cluster: Electron transfer flavoprotein subunit
           beta; n=44; cellular organisms|Rep: Electron transfer
           flavoprotein subunit beta - Mus musculus (Mouse)
          Length = 255

 Score = 37.5 bits (83), Expect = 0.058
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +2

Query: 2   VVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV 97
           V+SVE+PP R AG  +   + LVAKLKE G +
Sbjct: 224 VISVEEPPQRSAGVKVETTEDLVAKLKEVGRI 255


>UniRef50_Q68FU3 Cluster: Electron transfer flavoprotein subunit
           beta; n=194; cellular organisms|Rep: Electron transfer
           flavoprotein subunit beta - Rattus norvegicus (Rat)
          Length = 255

 Score = 36.7 bits (81), Expect = 0.10
 Identities = 17/32 (53%), Positives = 22/32 (68%)
 Frame = +2

Query: 2   VVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV 97
           V+SVE+PP R AG  +   + LVAKLKE G +
Sbjct: 224 VISVEEPPQRLAGVKVETTEDLVAKLKEVGRI 255


>UniRef50_Q8ZQL9 Cluster: Putative electron transfer flavoprotein
           beta subunit; n=3; Salmonella|Rep: Putative electron
           transfer flavoprotein beta subunit - Salmonella
           typhimurium
          Length = 284

 Score = 35.1 bits (77), Expect = 0.31
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +2

Query: 2   VVSVEDPPVRQAGSIIPDVDTLVAKLK 82
           ++ V++P  R+AG I+PD++TL+ KLK
Sbjct: 252 IIKVDEPARRKAGIIVPDINTLLDKLK 278


>UniRef50_P38975 Cluster: Electron transfer flavoprotein subunit
           beta; n=144; cellular organisms|Rep: Electron transfer
           flavoprotein subunit beta - Paracoccus denitrificans
          Length = 252

 Score = 34.3 bits (75), Expect = 0.54
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +2

Query: 2   VVSVEDPPVRQAGSIIPDVDTLVAKLKEGG 91
           VVSV +P  R+AG  +  VD LV KLKE G
Sbjct: 221 VVSVREPEGRKAGIKVGSVDELVGKLKEAG 250


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,491,833
Number of Sequences: 1657284
Number of extensions: 2843282
Number of successful extensions: 5730
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5729
length of database: 575,637,011
effective HSP length: 88
effective length of database: 429,796,019
effective search space used: 10315104456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)