Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D17
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   2.4  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    25   3.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   4.2  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    24   7.3  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    23   9.6  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    23   9.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    23   9.6  

>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 97  VIVNRTFNLSIVKNHREHFYIKC 165
           ++++++F   IVKNH +   +KC
Sbjct: 461 LVISKSFGTLIVKNHNQLSLLKC 483


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 120 IKSSIYDYTCPPSLSLATRVSTSGMMEPACRTGGSSTETT 1
           + S +Y YT     + A+ +ST+G  + A    G + ETT
Sbjct: 36  VTSKVYAYTTVTLEAAASAISTNGAAKEAATAAGDA-ETT 74


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -1

Query: 154  KNVPYDFSLLIN*KFDLRLHMSAFLKLSNE-SVDIRYDGASLSD--WRIFHRDH 2
            K +P+D S+L N   +L    + FLK + E  VD         D  W+I + DH
Sbjct: 1214 KGLPFDKSILDNHSAELNDAFNLFLKAAVEYKVDSNESSEHFQDTRWKIIY-DH 1266


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   VSVEDPPVRQAGSIIPDVDTLVAKLKEGG 91
           VSV +P  ++   ++  VD +V  LKE G
Sbjct: 224 VSVSEPVQKRQNIMVKSVDEMVKTLKELG 252


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 100 IVNRTFNLSIVKNHREHFYIKCL 168
           I  RTF+LS++ +    F +KC+
Sbjct: 718 IRTRTFSLSLLNDDGSSFALKCI 740


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 184 IKHDSINI*YKNVPYDFSL 128
           I H+S+N  Y  +PYD  L
Sbjct: 115 ISHESVNEEYTELPYDAHL 133


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 190 IYIKHDSINI*YKNVPYDFSLLIN 119
           +Y+  D  +  Y N+PYD  +L++
Sbjct: 410 VYLLDDPESACYVNLPYDIGILLS 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 830,196
Number of Sequences: 5004
Number of extensions: 12554
Number of successful extensions: 41
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)