Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D17
         (340 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0534 - 6958965-6959339,6960604-6960732                           28   2.1  
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101...    26   6.6  

>04_01_0534 - 6958965-6959339,6960604-6960732
          Length = 167

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 105 YDYTCPPSLSLATRVSTSGMMEPACRTGGSSTETT 1
           +D+ CP  + ++T V   G +EP     G   E T
Sbjct: 4   FDHMCPGFVQVSTSVGIGGRIEPVSTYNGDQYEIT 38


>01_06_1516 -
           37908284-37908497,37909666-37909733,37909809-37910186,
           37910315-37910393,37910433-37910749
          Length = 351

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 2   VVSVEDPPVRQAGSIIPDVDTLVAKLKEGGHV*S*IE 112
           V+SV   PV   GS+ PD+   V  L EG H+ S I+
Sbjct: 222 VLSVSQVPVHMEGSLPPDIRERVFYL-EGDHMHSSIQ 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,333,735
Number of Sequences: 37544
Number of extensions: 76519
Number of successful extensions: 182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)