Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D16
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0343 - 24234026-24234235,24234254-24234502,24234642-242349...    32   0.51 
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098...    32   0.51 
02_04_0349 + 22222091-22222639,22222718-22223695                       29   4.8  
08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890           29   6.3  
02_02_0037 - 6260171-6260382,6260657-6260723                           28   8.3  

>05_05_0343 -
           24234026-24234235,24234254-24234502,24234642-24234959,
           24235111-24235371,24235457-24235534,24235834-24236262
          Length = 514

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +1

Query: 538 DRKWECEDKMPASAAACKDIARQLVEDWPGKDLQVILGGGRQVLVSNSTGTKE 696
           D +W C++K+   A        + + D  GK +  I+GGG  V      G  +
Sbjct: 427 DYRWNCQNKLNGIAKTSLTAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVAD 479


>01_06_0765 -
           31808775-31809443,31809547-31809703,31809777-31809894,
           31810170-31810308
          Length = 360

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 277 LKTYSANKMVPDSSCSATALFCGVKANQETIGVDASVKHKDCSASL--RPEARLKSLASI 450
           L+     KM+ + S  ATA+  G K N E   + A +  KD   ++     A LK     
Sbjct: 278 LEEEETKKMIEEESIDATAIDSGEKENPEVAELKAKLMAKDMEVAILTADNAELKKQVGE 337

Query: 451 ALKAGKSA 474
           A +A K A
Sbjct: 338 AAEAAKKA 345


>02_04_0349 + 22222091-22222639,22222718-22223695
          Length = 508

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 701 GSSLVPVLLDTRTCLPPPRITCKSFPGQ 618
           GS+  P   D    LPPP   C  FP Q
Sbjct: 2   GSASTPAASDGEIKLPPPHAVCMPFPAQ 29


>08_01_0946 + 9393206-9393547,9394495-9395078,9395410-9395890
          Length = 468

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -2

Query: 305 TILLAEYVFNSPTCGNFS*TNL*LSPPLYILVAVTVLGPMPSPTKRITFFATPR 144
           +++LA Y+  +   GN    +   S  L+I+  + +L P+  P K   F ++PR
Sbjct: 126 SVVLAVYLVTTTVLGNAIKLSDATSYTLFIVTVLLLLAPLAIPVKMTLFRSSPR 179


>02_02_0037 - 6260171-6260382,6260657-6260723
          Length = 92

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 510 PGSHLRPQC*S*MGMRRQNAC*RCCLQGYREATCGRLARK 629
           P SH +  C     +R QN    C L+GY +  C  L R+
Sbjct: 39  PSSHFKGLC-----LRSQNCDNECMLEGYMDGKCKYLTRR 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,320,512
Number of Sequences: 37544
Number of extensions: 558442
Number of successful extensions: 1499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)