Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_D13
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 75 1e-14
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 35 0.010
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 34 0.014
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 33 0.042
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 33 0.042
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 32 0.055
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 32 0.073
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 31 0.17
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 31 0.17
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 29 0.39
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 29 0.68
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 28 1.2
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 28 1.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 28 1.2
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 27 2.1
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.7
SPAC1486.08 |||mitochondrial inner membrane protein involved in ... 27 2.7
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 3.6
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 3.6
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 26 3.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 4.8
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.8
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 4.8
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 25 6.3
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe... 25 6.3
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 25 8.4
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 74.5 bits (175), Expect = 1e-14
Identities = 39/97 (40%), Positives = 60/97 (61%)
Frame = +3
Query: 156 FQGVQKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQN 335
+Q +Q ++ V ++L++QL EN V EL+ + DS +YK IGP LVKQ EEA+ N
Sbjct: 8 YQNLQTELSTYVESLKKLETQLQENTTVLNELEKVAPDSNIYKQIGPTLVKQSHEEAKTN 67
Query: 336 VSKRMEYISKEIKRTDDHICALENKQEALQENLNKLR 446
V R+++I+KEI R LEN+ + QE +K++
Sbjct: 68 VKTRLDFINKEIAR-------LENQTKISQEEFSKVK 97
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 34.7 bits (76), Expect = 0.010
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +3
Query: 126 QKKFQKXLELFQGVQKDIKKAVT-QKQQLDSQLN-ENKAVKEELKLLRKDSEVYKLIGPV 299
++K +K LE + ++ ++ QK + S +N + +A KEE K+ E + I
Sbjct: 95 ERKKRKELESAKNNLLNVYDSLKMQKASVSSMVNRKQRAAKEEQKI---QEEFERQI--- 148
Query: 300 LVKQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRND 452
DL E +Q + +E + E +R + E ++EAL+E +LRN+
Sbjct: 149 ---TDLLEEQQQLKLEIERLEAETERANSETEQYEKQKEALEEEYEELRNE 196
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 34.3 bits (75), Expect = 0.014
Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Frame = +3
Query: 108 TMAEEIQKKFQKXLELFQGVQKDIKKAVTQKQ-QLDSQLNENKAVKEELKLLRK-----D 269
T+ EE QK +K L + ++ + ++ TQ Q +LDS + N +K+E+ L++ +
Sbjct: 408 TIREENQKNIKK-LNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTVSESE 466
Query: 270 SEVYKLIGPVLVKQ-DLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLR 446
+E +L KQ ++E ++ E ++ ++ + L+NK+E L E LR
Sbjct: 467 AERKRLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQLKEQEEDLQNKEEELTELRKLLR 526
Query: 447 ---NDLGKLKL 470
D KL+L
Sbjct: 527 EQTQDSQKLRL 537
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 32.7 bits (71), Expect = 0.042
Identities = 22/98 (22%), Positives = 50/98 (51%)
Frame = +3
Query: 171 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 350
KD K + ++ +++++ E KAV+ E+K+ E + + K E+ +Q+ +
Sbjct: 61 KDKKALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPK---EKEKQDT---I 114
Query: 351 EYISKEIKRTDDHICALENKQEALQENLNKLRNDLGKL 464
++IS ++ + +E + E+L+ + + DL KL
Sbjct: 115 QWISNAVEELERQAELIEAEAESLKATFKRGKKDLSKL 152
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.7 bits (71), Expect = 0.042
Identities = 19/65 (29%), Positives = 37/65 (56%)
Frame = +3
Query: 309 QDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGKLKLKA*KMC 488
+DLE+ N +++++ + K + LE+ ++ +E L KL DLGK++ + +
Sbjct: 299 EDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLEKLTGDLGKIQGEIESLE 358
Query: 489 ELKVK 503
+LKVK
Sbjct: 359 KLKVK 363
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 32.3 bits (70), Expect = 0.055
Identities = 27/117 (23%), Positives = 62/117 (52%), Gaps = 9/117 (7%)
Frame = +3
Query: 207 LDSQLNENKAVKEELKLLRKDSEVYK-LIGPVLVKQDLEEARQNVSKR------MEY--I 359
+DS+ ++ K + E++K L ++ L+ + +++D E + + R E+ I
Sbjct: 70 IDSK-DKEKPLDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDI 128
Query: 360 SKEIKRTDDHICALENKQEALQENLNKLRNDLGKLKLKA*KMCELKVKHFYSSIMTH 530
K ++++D+ +C L+ + E LQ+ L + N+L + + + ++ E K K S+ +H
Sbjct: 129 KKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKELIE-KQKVQKESVKSH 184
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 31.9 bits (69), Expect = 0.073
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Frame = +3
Query: 84 SNHTLX*NTMAEEIQKKFQKXLELFQGVQKDIKKAVTQKQQLDSQLNENKAVKEELKLLR 263
SN +L N E ++ + E + ++ D+ K+QL+SQL KA +K L
Sbjct: 1238 SNKSLRENL--ERNEEVITELREKIETLKTDLANFRLNKEQLESQLQTEKAA---VKKLE 1292
Query: 264 KDSEVYKLIG-PVLVKQDLEEARQNVSKRM--EYISKE--IKRTDDHICALENKQEALQE 428
+E YK +L+ + + + + R+ E +SKE I+ + I L+++ E ++
Sbjct: 1293 NSNEEYKRHNQEILLSLNSSTSTSSDASRLKNELVSKENLIEELNQEIGHLKSELETVKS 1352
Query: 429 NLNKLRNDLGKLKLKA*KMCELK 497
L N+ + + K + ELK
Sbjct: 1353 KSEDLENERAQNQSKI-EQLELK 1374
Score = 27.5 bits (58), Expect = 1.6
Identities = 35/170 (20%), Positives = 73/170 (42%), Gaps = 11/170 (6%)
Frame = +3
Query: 15 QLKFFEQVKKKRKRFLYXTVYFLSNHTLX*NTMAEEIQKKFQKXLELFQGVQKDIKKAVT 194
QL E + ++ L + FL N AEE + + ++ +++
Sbjct: 53 QLVLQEVNHEHKENVLTKKINFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLEN--- 109
Query: 195 QKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM-------- 350
Q ++ D+ EN++++ L++ S++ + + +D EA QN + +
Sbjct: 110 QNKRFDALTTENQSLRRANSELQEQSKIAS--EQLSIAKDQIEALQNENSHLGEQVQSAH 167
Query: 351 EYISKEIKRTDDHICALEN---KQEALQENLNKLRNDLGKLKLKA*KMCE 491
+ +S +R H+ A + K+E L + + L +DL L+ K+CE
Sbjct: 168 QALSDIEERKKQHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCE 217
Score = 25.4 bits (53), Expect = 6.3
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = +3
Query: 219 LNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICA 398
L ENK + EL R ++E L KQ L +++ K E KE+ R D
Sbjct: 1017 LEENKHLNNELSSHR-NAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHADARST 1075
Query: 399 LENKQEALQENLNKLRNDLGKLKLKA 476
L+ +E + L ++ + ++ LKA
Sbjct: 1076 LQKLREDYTKALEQVEDLNKEIALKA 1101
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.17
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 141 FETFFVFLPPLCFSXRYDLIENKQXNTEIFSVFFSPARKILV 16
+++FF F PP FS RY ++ + N++ F ++V
Sbjct: 346 YQSFFYFYPPSVFSNRYQILADGLVNSDTLDTGFLAVALLIV 387
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 30.7 bits (66), Expect = 0.17
Identities = 27/116 (23%), Positives = 52/116 (44%)
Frame = +3
Query: 126 QKKFQKXLELFQGVQKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLV 305
+ KF+ ++ F G + ++ QK+ + + +N A K L + R+ + L
Sbjct: 391 KSKFEDIVKTFDGYRSEMNDVDIQKRDIQNSIN---AAKSCLDVYREQLNTERARENNLG 447
Query: 306 KQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGKLKLK 473
+E+ R N S ++ +EI + I LE+K+ L L ++ +L L K
Sbjct: 448 GSQIEK-RANESNNLQ---REIADLSEQIVELESKRNDLHSALLEMGGNLTSLLTK 499
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 29.5 bits (63), Expect = 0.39
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 111 MAEEIQKKFQKXLELFQGVQKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDS--EVYK 284
MA+ K FQK L + + +K QQL Q N N + + LL +D E+ K
Sbjct: 217 MAQSKSKSFQKHKRLDEQLLNSVKSMKKVSQQLKPQKNTNDS-NNDHTLLSQDQLIELSK 275
Query: 285 LIGP 296
L+ P
Sbjct: 276 LVKP 279
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.7 bits (61), Expect = 0.68
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Frame = +3
Query: 111 MAEEIQKKFQKXLELFQGVQKDIKKAVTQKQQLDSQLNENKAVKEEL------KLLRKDS 272
+AEEIQ +K L++ V K KAV + L+ E K K E K LR
Sbjct: 92 LAEEIQGCEKKLESLYEEVAKAKAKAVEDQLALEEADKEAKKAKTEAPVEAANKSLRSRK 151
Query: 273 EVYKLIGPVLVKQDLEEARQNVSKRMEYISKE 368
+ ++ P ++ ++ + KR ++E
Sbjct: 152 KTPEIAAPANIEPEVAPTTKTPKKRAALSNEE 183
Score = 27.1 bits (57), Expect = 2.1
Identities = 29/116 (25%), Positives = 53/116 (45%)
Frame = +3
Query: 174 DIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRME 353
+I + V Q LD Q A EEL + +E L+ P+ +QD + + V + M
Sbjct: 2 NIAQEVAVLQYLDIQQENPNAPNEEL--FNRTAESSLLLEPI--EQD--QLKDLVEEWMH 55
Query: 354 YISKEIKRTDDHICALENKQEALQENLNKLRNDLGKLKLKA*KMCELKVKHFYSSI 521
+K + + + +N +A + +LRND+ K + + CE K++ Y +
Sbjct: 56 DSNKSDSKLLSNQVS-QNDNDARKNLRKRLRNDVLKDLAEEIQGCEKKLESLYEEV 110
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/63 (20%), Positives = 35/63 (55%)
Frame = +3
Query: 171 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 350
++I+ +++ + +N+ +E + ++KD EV ++ ++ L +AR+N + M
Sbjct: 508 REIESQLSKCMSAMASQRQNETEEETMARIQKDPEVLGILQDPAMQAILGQARENPAALM 567
Query: 351 EYI 359
E++
Sbjct: 568 EHM 570
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 231 KAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTD-DHICALEN 407
KA + +K D++ L GP++ +QD++ + + K + + + D I LE
Sbjct: 603 KAAVDRIKRTGYDNDSIILSGPIITEQDVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEE 662
Query: 408 KQEALQENL 434
+ L++ L
Sbjct: 663 AKTVLRDTL 671
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.9 bits (59), Expect = 1.2
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Frame = +3
Query: 111 MAEEIQKKFQKXLELFQGVQKDIKKAVTQKQQLDSQLNE-----------NKAVKEELKL 257
++ + K + + ++K+++K + +K Q + +L E N +K+EL
Sbjct: 1061 ISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRNVELEELTSKYGKLGEENAQIKDELLA 1120
Query: 258 LRKDSEVYKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLN 437
LRK S+ + V DL+E S +E ++ E + + EAL E +
Sbjct: 1121 LRKKSKKQHDLCANFV-DDLKEK----SDALEQLTNEKNELIVSLEQSNSNNEALVEERS 1175
Query: 438 KLRNDLGKLK 467
L N L +K
Sbjct: 1176 DLANRLSDMK 1185
Score = 26.2 bits (55), Expect = 3.6
Identities = 25/124 (20%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Frame = +3
Query: 123 IQKKFQKXLELFQGVQKDIKKA-----VTQK--QQLDSQLNENKAVKEELKLLRKDSEVY 281
+QK + L L + ++ +++A V + Q+LD ++ +K E KL KDS +
Sbjct: 1486 LQKLHSESLSLMENIKSQLQEAKEKIQVDESTIQELDHEITASKN-NYEGKLNDKDSIIR 1544
Query: 282 KLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRNDLGK 461
L +++E+ +++ + + + I ++ L+ + +++ ++LG+
Sbjct: 1545 DL------SENIEQLNNLLAEEKSAVKRLSTEKESEILQFNSRLADLEYHKSQVESELGR 1598
Query: 462 LKLK 473
KLK
Sbjct: 1599 SKLK 1602
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 183 KAVTQKQQLDSQLNENKAVKEELKLLRKDSE 275
KA + QQL SQL EN V ++ LRK E
Sbjct: 61 KASSGMQQLKSQLEENIPVNSAMENLRKVEE 91
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.6 bits (56), Expect = 2.7
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 282 KLIGPVLVKQDLEEARQNVSKRM 350
+ +GP L+ D+E+ R+N S+++
Sbjct: 281 RYLGPALLNPDMEDDRENTSRKL 303
>SPAC1486.08 |||mitochondrial inner membrane protein involved in
cytochrome c oxidase assembly Cox16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 26.6 bits (56), Expect = 2.7
Identities = 17/88 (19%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +3
Query: 15 QLKFFEQVKKKRKRFLYXTVYFLSNHTLX*NTMAEEIQKKFQKXLELFQGVQKDIK-KAV 191
+ K + +++ K+ F+Y + FLS+ L + + Q KF + E + + +D + +
Sbjct: 5 RFKSWYRLQAKKSPFIYVGLPFLSSVLLVWSCLIPISQVKFNRRDEQVKSLSRDAELDII 64
Query: 192 TQKQQLDSQLNENKAVKEELKLLRKDSE 275
+++++D + + ++L L ++ E
Sbjct: 65 KRRRKVDVNEEYYRILLDQLNLQNEEYE 92
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 204 VVSE*PLSLCLFEHLEIIRVVFETFFVFLPPLCFSXRYDLIENKQXNTE 58
V S+ + LF + I+ V+F FF F C Y +EN++ + E
Sbjct: 15 VSSQTNTEILLFALVIILSVIFINFFFFYLCRCCVYFYHTLENQEGDDE 63
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.2 bits (55), Expect = 3.6
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Frame = +3
Query: 105 NTMAEEIQKKFQKXLELFQGVQKDIKKAV-TQKQQLDSQLNENKAVKEEL-KLLRKDSEV 278
N E+Q + + + ++D + L +Q ++ + EL + SEV
Sbjct: 776 NARLTEVQDRLKDITDKLASAREDAMSLYGSVVDSLQTQSSDRQTAITELNEEFATSSEV 835
Query: 279 YKLIGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRND 452
I K V ++ + KEI+ + + + E LQ+ +N ++ D
Sbjct: 836 DNKISIEETKLKFMNVNSYVMEQYDARKKEIEELESKMSDFDQSVEELQDEMNSIKED 893
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 318 EEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRN 449
E RQN + + + E++R + +E +++ +ENLNK RN
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRE-TQQIEIRKQKREENLNKRRN 52
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 366 EIKRTDDHICALENKQEALQENLNKLRNDLGKLK 467
E ++ D I AL + ++LQE L ++ND L+
Sbjct: 330 ETEKLQDQIKALLERNQSLQEALETVKNDEKNLR 363
Score = 25.0 bits (52), Expect = 8.4
Identities = 21/115 (18%), Positives = 49/115 (42%)
Frame = +3
Query: 108 TMAEEIQKKFQKXLELFQGVQKDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKL 287
T +E ++K L D + + +L L E + L+ SE L
Sbjct: 371 TEMKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGL---LEFQSSVSEQRDL 427
Query: 288 IGPVLVKQDLEEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRND 452
+ ++ +++ +NV ++ EY+ +E+ +++ +K L E + L+++
Sbjct: 428 LYQEQIQSSIKDM-ENVFRKNEYLMEELNELKNNLEVESSKVLRLDEEMKCLKDE 481
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/60 (25%), Positives = 32/60 (53%)
Frame = +3
Query: 171 KDIKKAVTQKQQLDSQLNENKAVKEELKLLRKDSEVYKLIGPVLVKQDLEEARQNVSKRM 350
K I++ Q ++ ++N NK EEL +++ +L L+ Q ++E ++ +KR+
Sbjct: 358 KLIEERQRQHEERLKRINANKKALEELNQKKRELAQQQLKEQELLMQKIKETDRSGNKRL 417
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 138 QKXLELFQGVQKDIKKAVTQK--QQLDSQLNENKAVK 242
Q L+LF +QK+ K+++ K +++D L + K +K
Sbjct: 24 QHRLDLFDKLQKEYKESLATKPREEIDITLPDGKVIK 60
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +2
Query: 95 LXLKHNGGRNTKKVSKTTRIISRCSKRHKESGHSE 199
+ L HN N + + + ++SR +R + HSE
Sbjct: 118 IKLWHNDYSNVRGMESMSSLVSRLPQRQSSASHSE 152
>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 313 IWKKPDKTSPNVWSTLAKKSKEQMITYV 396
IWK+ T+P+V K+K+ TYV
Sbjct: 37 IWKRAMSTAPHVEYDAGSKTKKVATTYV 64
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +3
Query: 318 EEARQNVSKRMEYISKEIKRTDDHICALENKQEALQENLNKLRN 449
EEAR V + +I I AL+ E LQE KL N
Sbjct: 453 EEARSKVPDEFQTQYPDIANPPTLILALKGYIERLQEQQGKLNN 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,514
Number of Sequences: 5004
Number of extensions: 30781
Number of successful extensions: 165
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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