Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D12
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.6  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 410 FTRPFELRIHS 442
           F+RPFE R+HS
Sbjct: 101 FSRPFEKRLHS 111


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 433 AQFEGPCKSEKHSASSDDILSNGN 362
           A F G   + K +A SDD L+N N
Sbjct: 70  ALFPGMAAAGKGAARSDDWLANAN 93


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +2

Query: 431 RIHSNSKSNFKNVVCRP*ETVDSGTGCKKNGASL*WRSSINNENSCLSGETWFYQLWNI* 610
           R++ +  SN+  ++ RP    +S     K G  L     +N +N  ++   W  Q WN  
Sbjct: 23  RLYDDLLSNYNRLI-RPVGN-NSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDY 80

Query: 611 ARNTNP 628
               NP
Sbjct: 81  KLKWNP 86


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 88  RRLIFNKDMFQE*SNKLKSVRKNKTP 11
           +R+   K+ FQ+ +  +K+ R+N  P
Sbjct: 309 KRIQMRKNRFQKIAESMKTARENPGP 334


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 88  RRLIFNKDMFQE*SNKLKSVRKNKTP 11
           +R+   K+ FQ+ +  +K+ R+N  P
Sbjct: 309 KRIQMRKNRFQKIAESMKTARENPGP 334


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +2

Query: 419 PFELRIHSNSKSNFKNVVCRP*ETVDSGTGCKKNGASL*WRSSINNENSCLSGETWFYQL 598
           P   R++ +  SN+  ++ RP    ++ T   + G  L     +N +N  ++   W  Q 
Sbjct: 32  PDTKRLYDDLLSNYNRLI-RPVMN-NTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVEQR 89

Query: 599 WNI*ARNTNPK 631
           WN      NP+
Sbjct: 90  WNDYKLKWNPE 100


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 88  RRLIFNKDMFQE*SNKLKSVRKNKTP 11
           +R+   K+ FQ+ +  +K+ R+N  P
Sbjct: 248 KRIQMRKNRFQKIAESMKTARENPGP 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,630
Number of Sequences: 438
Number of extensions: 4474
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)