Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D10
         (512 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellu...    44   0.003
UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Ze...    40   0.033
UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellul...    40   0.044
UniRef50_A7SP63 Cluster: Predicted protein; n=1; Nematostella ve...    35   1.2  
UniRef50_Q9ZCJ2 Cluster: Uncharacterized protein RP748; n=9; Ric...    32   6.7  
UniRef50_UPI00006CE58F Cluster: hypothetical protein TTHERM_0014...    32   8.8  
UniRef50_A0C8H8 Cluster: Chromosome undetermined scaffold_158, w...    32   8.8  

>UniRef50_P62266 Cluster: 40S ribosomal protein S23; n=141; cellular
           organisms|Rep: 40S ribosomal protein S23 - Homo sapiens
           (Human)
          Length = 143

 Score = 43.6 bits (98), Expect = 0.003
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +1

Query: 10  QVVKVANVSLLALYKEKKERPRS 78
           +VVKVANVSLLALYK KKERPRS
Sbjct: 121 KVVKVANVSLLALYKGKKERPRS 143


>UniRef50_Q8H6J0 Cluster: Putative 40S ribosomal protein; n=1; Zea
           mays|Rep: Putative 40S ribosomal protein - Zea mays
           (Maize)
          Length = 309

 Score = 39.9 bits (89), Expect = 0.033
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +1

Query: 10  QVVKVANVSLLALYKEKKERPRS 78
           +VVKV+ VSLLAL+KEKKE+PRS
Sbjct: 247 KVVKVSGVSLLALFKEKKEKPRS 269


>UniRef50_P32827 Cluster: 40S ribosomal protein S23; n=66; cellular
           organisms|Rep: 40S ribosomal protein S23 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 145

 Score = 39.5 bits (88), Expect = 0.044
 Identities = 18/23 (78%), Positives = 22/23 (95%)
 Frame = +1

Query: 10  QVVKVANVSLLALYKEKKERPRS 78
           +VVKV+ VSLLAL+KEKKE+PRS
Sbjct: 123 KVVKVSGVSLLALWKEKKEKPRS 145


>UniRef50_A7SP63 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 601

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 19/43 (44%), Positives = 24/43 (55%)
 Frame = +3

Query: 180 CVLVSVFNLDSICAVNDVIILIFATTECHDVKTLLMLSNYALD 308
           CV+ SVF L S CA   V+++I  TT  H    LL+L   A D
Sbjct: 38  CVINSVFGLISSCANFFVVLVIARTTSLHTPSNLLILGLAAFD 80


>UniRef50_Q9ZCJ2 Cluster: Uncharacterized protein RP748; n=9;
           Rickettsia|Rep: Uncharacterized protein RP748 -
           Rickettsia prowazekii
          Length = 371

 Score = 32.3 bits (70), Expect = 6.7
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -1

Query: 272 DVMALSSSKYQNDN--IIYCTNRVKVEYRNKYTVDXTFKLNLTKIEEKQR*KSQNQYNIY 99
           +++A S  KY  D   I+   NR+ V+Y     +  T  LNL     + R K     ++ 
Sbjct: 242 NLLADSIRKYNLDKKAILIGDNRIDVDYSENIDISFTSTLNLFNSNVQDRAKDLGINHMG 301

Query: 98  LITMYTYDLGR 66
            + +  YDLGR
Sbjct: 302 FMHLIAYDLGR 312


>UniRef50_UPI00006CE58F Cluster: hypothetical protein TTHERM_00145290;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00145290 - Tetrahymena thermophila SB210
          Length = 1504

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +1

Query: 157  FNLKVXSTVYLFLYSTLTLFVQXXXXXXXXXXXXXAMTSKHY*CFQTT--LLTNISNKLN 330
            F L +    Y  L   L +F Q                 K   C Q+   LLT    ++N
Sbjct: 1111 FYLNLRKPKYQILKHDLQIFAQIVNQNASFEEIHINFDEKQKTCIQSISHLLTRYRQEIN 1170

Query: 331  SKEQTLTIF 357
             KEQTLTIF
Sbjct: 1171 LKEQTLTIF 1179


>UniRef50_A0C8H8 Cluster: Chromosome undetermined scaffold_158, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_158, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 1253

 Score = 31.9 bits (69), Expect = 8.8
 Identities = 21/96 (21%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
 Frame = -1

Query: 365  KQINIVNVCSFEF-NLFDMLVKSVV*KHQ*CFDVMALSSSKYQNDNIIYCTN--RVKVEY 195
            ++IN+ N+  F   N   +L K++   H+     + +       D+ +Y  +  ++K++ 
Sbjct: 1134 QRINVYNISEFNLINEIYILSKNISLVHKYNESHLIVVEDDDSQDHTVYQVDSYKIKIDQ 1193

Query: 194  RNKYTVDXTFKLNLTKIEEKQR*KSQNQYNIYLITM 87
                + + TFK +L+++E +   K++N+ NI+ I +
Sbjct: 1194 YQTKSFNLTFKNSLSQLEFQIDLKNENEENIFQIQL 1229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,825,021
Number of Sequences: 1657284
Number of extensions: 5788308
Number of successful extensions: 14450
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14446
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)