Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D10
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...    39   0.002
Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kin...    27   7.9  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +1

Query: 10  QVVKVANVSLLALYKEKKERPRS 78
           ++VKVAN SL+AL+K KKERPRS
Sbjct: 121 KIVKVANTSLIALFKGKKERPRS 143


>Z70212-5|CAA94165.3|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.7 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 286 CFQTTLLTNISNKLNSKEQTLTIFI---CFSDLLSGSALFIS 402
           CFQTTL+  I         TL I +   CFS  +  S  FI+
Sbjct: 19  CFQTTLIYTIIRHSPKNLSTLKIILLINCFSQSIQSSMAFIT 60


>Z69885-5|CAA93756.2|  882|Caenorhabditis elegans Hypothetical
           protein T04C10.1 protein.
          Length = 882

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 200 EYRNKYTVDXTFKLNLTKIEEKQR*K-SQNQYNIYLITM 87
           E+RN++ +D TF+    K+++    + S+NQ+N   ++M
Sbjct: 822 EWRNQFELDDTFQQKQRKVDDSVSNQISRNQFNPQQVSM 860


>AY064464-1|AAL40874.1|  882|Caenorhabditis elegans minibrain kinase
           protein.
          Length = 882

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 200 EYRNKYTVDXTFKLNLTKIEEKQR*K-SQNQYNIYLITM 87
           E+RN++ +D TF+    K+++    + S+NQ+N   ++M
Sbjct: 822 EWRNQFELDDTFQQKQRKVDDSVSNQISRNQFNPQQVSM 860


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,034,753
Number of Sequences: 27780
Number of extensions: 150594
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)