Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D06
         (614 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D5619F Cluster: PREDICTED: similar to CG6604-PA;...    43   0.005
UniRef50_Q4Q6J6 Cluster: Putative uncharacterized protein; n=5; ...    33   5.4  

>UniRef50_UPI0000D5619F Cluster: PREDICTED: similar to CG6604-PA;
           n=4; Endopterygota|Rep: PREDICTED: similar to CG6604-PA
           - Tribolium castaneum
          Length = 594

 Score = 43.2 bits (97), Expect = 0.005
 Identities = 23/41 (56%), Positives = 26/41 (63%)
 Frame = +1

Query: 328 KSGGDRMVAEEGKTRATDFSIAAIMARSAVERRSPDARSPP 450
           +S    ++A   KTRATDFSIAAIMAR AV     DAR  P
Sbjct: 86  ESAAAGLLAPTAKTRATDFSIAAIMARGAVAPPDADARELP 126


>UniRef50_Q4Q6J6 Cluster: Putative uncharacterized protein; n=5;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 1197

 Score = 33.1 bits (72), Expect = 5.4
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
 Frame = +1

Query: 310 ENAECW---KSGGDRMVAEEGKTRATDFSIAAIM--ARSAVERRSPDARSPP----HTAC 462
           E+  CW   +S  DR+V EEG T + D    A++  ARS     +  A + P    H A 
Sbjct: 576 ESTACWTTDESPNDRLVTEEGSTGSMDSPPEALVTGARSHTSTAAASATASPTQAIHMAF 635

Query: 463 LISPGXRIPAEFARV 507
               G R+P   A+V
Sbjct: 636 PTPDGRRVPHSSAQV 650


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,650,070
Number of Sequences: 1657284
Number of extensions: 10354485
Number of successful extensions: 29444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29439
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)