Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D06
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    29   0.71 
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    27   2.2  
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    27   2.8  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   6.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   6.6  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    25   6.6  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    25   8.7  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   8.7  

>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 4   SAPRLPYRLLTVTTPHIIARTFHLSDG 84
           S P +PYR  T+ TP ++A+   LS G
Sbjct: 632 SQPLVPYRETTIATPDLLAKNKELSIG 658


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 308 WKTPSAGSREETGWWQKRERQELQTFRSRPSW 403
           W+T S  +RE+   W     QE Q  R    W
Sbjct: 299 WRTLSTFAREQLSHWGISNPQEFQILRQMTGW 330


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 328 KSGGDRMVAEEGKTRATDFSI----AAIMARSAVERRSPDARSPPHTACLISPGXRIPAE 495
           K+GG+RMV   G+  A  +          AR AV      A   P T C++  G R   +
Sbjct: 10  KNGGERMVLPAGEAAAKYYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAG-RFRGK 68

Query: 496 FARVIELSRVE 528
             RV+ LS++E
Sbjct: 69  --RVVVLSQLE 77


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 45  TTHHRANLSSERRLQNVHFSFLV-VPQ*ISQFSIHLETLKCHSRLGVFVCRNLKKNKI 215
           T  + AN+   R L   H S LV VP  I    I   TL C +     VCRN +  +I
Sbjct: 122 TLRYDANILPIRNLTASHISKLVRVPGII----IGASTLSCRATALHLVCRNCRATRI 175


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 201  LSYDIRKHRGGYDILVFLNEY*IEKFTVAR 112
            +SY +RKH+GGY ++   ++Y   K T++R
Sbjct: 1377 ISY-VRKHQGGYGVVAVSDKY--SKQTLSR 1403


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -1

Query: 377 VALVFPSSATILSPPDFQHSAFSTSIKHLLESYALQVPANHHTNNVRD 234
           VAL  P +A I+       ++  TSIK LLE ++L    +H   N R+
Sbjct: 94  VALQLPGAARIID-----EASSETSIKQLLERHSLLTKVSHVLINGRN 136


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 66  LSSERRLQNVHFSFLVVPQ*ISQFSIHLETLK-CH 167
           L+   RL+N++F++ ++ + I +   HL++L  CH
Sbjct: 296 LNYPERLENLYFAYALMQRAIDKLYGHLDSLTFCH 330


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 359 SSATILSPPDFQHSAFSTSIKHLLESYALQVPANHHTNNVRDIVL 225
           S   +LSP D+  S +ST ++  L+SY  Q   N  +N  +D ++
Sbjct: 441 SEIILLSPDDWASSWYST-VRSQLDSYNCQFVVN--SNQPKDSIM 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,114
Number of Sequences: 5004
Number of extensions: 40399
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)