Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_D06
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1156 - 10873223-10873417,10873498-10873579,10874235-108743... 32 0.42
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450... 31 0.73
12_01_0525 - 4169605-4170417 29 2.9
10_06_0174 - 11485684-11485962 29 3.9
02_05_1021 + 33565866-33567431,33568317-33568604 29 3.9
01_07_0154 - 41532220-41533252,41533786-41533971,41534759-415350... 28 5.1
10_08_0414 + 17755427-17756000,17756181-17756308,17756434-177566... 28 6.8
05_03_0478 - 14526180-14526578 28 6.8
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 28 6.8
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 28 6.8
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 28 6.8
10_01_0334 - 3680612-3681266,3682253-3682374 27 8.9
09_04_0733 - 19791745-19791906,19792072-19792173,19792246-197923... 27 8.9
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 27 8.9
>07_01_1156 -
10873223-10873417,10873498-10873579,10874235-10874336,
10874456-10874553,10874692-10874778,10874869-10875317,
10875414-10875744,10875766-10875884,10875935-10876124,
10876319-10876657,10876735-10876875,10876958-10877440,
10877703-10877901,10879447-10879643
Length = 1003
Score = 31.9 bits (69), Expect = 0.42
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 334 GGDRMVAEEGKTRATDFSIAAIMARSA 414
GGDR V EE + R TD S A+MA S+
Sbjct: 47 GGDRAVVEEAEQRRTDSSQRAVMATSS 73
>02_05_1349 +
35841694-35843738,35844506-35844624,35844932-35845075,
35845189-35845310,35845474-35845609,35845861-35845957,
35846727-35846899,35847099-35847262,35847466-35847537,
35847833-35847928,35847999-35848124
Length = 1097
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = -1
Query: 419 STALRAMMAAIEKSVALVFPSSATILSPPDFQHSAFSTSIKHLLESYALQVPANHHT 249
ST R A+ + A P+ A++LS S++S H++ +Y L+ PA+ HT
Sbjct: 108 STTFRLFRFAMRHAHAAFHPNIASLLSLLRAS-SSYSDHFLHMIHAYLLKTPASIHT 163
>12_01_0525 - 4169605-4170417
Length = 270
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 334 GGDRMVAEEGKTRATDFSIAAIMAR 408
GGDR EG+TR+ +IAA A+
Sbjct: 49 GGDRRAGREGRTRSNTLAIAASFAK 73
>10_06_0174 - 11485684-11485962
Length = 92
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 239 GRCWCDG*RGPEVHRTLRGV*WMWKTPSAGSREETGWWQKRERQELQ 379
G+ W P VH G W W+ + S GWW+ R EL+
Sbjct: 43 GQMWRGMVACPLVHE---GGGWRWRKKPSSSSPHGGWWRLRPVTELE 86
>02_05_1021 + 33565866-33567431,33568317-33568604
Length = 617
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 186 RKHRGGYDILVFLNEY*IEKFTVARLKMKSEHFAAVAQMKGSRDDVW 46
R+ R YD +F N Y +E R ++ FAA A+ S D VW
Sbjct: 159 RRFRQEYDRCLFENTYGVEATDEGRKEVFGADFAAWARPGESDDAVW 205
>01_07_0154 -
41532220-41533252,41533786-41533971,41534759-41535039,
41535184-41535318,41535427-41535573,41535841-41536010,
41536110-41536197,41536999-41537219,41537725-41537810,
41537916-41537962
Length = 797
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 537 DLQLDAGELNDAGELCRDPXPW 472
DL LD GE ND G+L + W
Sbjct: 506 DLALDVGERNDVGQLAANADSW 527
>10_08_0414 +
17755427-17756000,17756181-17756308,17756434-17756694,
17756774-17757036,17758662-17759019
Length = 527
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = -2
Query: 286 SPMHFRSPLTITPTTSVTSYCFNHILF 206
SPM F PL + PTT+ S F ILF
Sbjct: 28 SPMDF-GPLNLLPTTTTASSDFGRILF 53
>05_03_0478 - 14526180-14526578
Length = 132
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 308 WKTPSAGSREETGWWQKRERQELQTFRSRPSWLAAR*NGAV--RTRVPR 448
W+T +G G W +R+R++ + R + AR G R R PR
Sbjct: 41 WQTIGSGCVSSGGSWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPR 89
>03_06_0003 + 30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 334 GGDRMVAEEGKTRATDFSIAAIMARSAVERRSPDARSPPHTACLISPGXRIPAEFARVIE 513
GG+ ++ E+G+ + DF +AA + R+ +R + + ISP F+ V
Sbjct: 851 GGNILLTEQGEVKLGDFGVAAQLTRTMSKRNTMEQGMYLWLVPQISPHKYPHRPFSHVSN 910
Query: 514 LSRVELQ 534
S + L+
Sbjct: 911 HSAIALR 917
>02_01_0301 +
2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -3
Query: 231 RIVLIIFCFFLSYDIRKHRGGYDILVFLNEY*IEKFTVARLKMKS 97
++ ++ CFF SY + KH G L +LN +E+ ++++L S
Sbjct: 601 KLRVLSLCFFSSYTLPKHIGKLKHLRYLN---LERTSISKLPKSS 642
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 354 CHHPVSSRLPALGVFHIHQTPLRVLCTSGPR*PSHQQRP*HRIVLIIFCFFLSY 193
C HP+ S G H P+ +L S PS ++RP +V +I F+SY
Sbjct: 453 CSHPLHS-----GRIAKHDIPITILLFSNLP-PSKRRRPTLTVVTVIVVIFMSY 500
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -1
Query: 452 CGGERASGLRRSTALRAMMAAIEKSVALVFPSSATILSPPDFQHSAFSTSIKHLLESYAL 273
CGG S RR + RA S FPS+A + S S+ I+H E +
Sbjct: 182 CGGHGRSRRRRGQSRRARGGRKSSSSRRSFPSAAVLPSSGTVLPSSSCPCIRHRDEDNKM 241
Query: 272 QVPANHHTNNVRDIVL 225
+ + +IV+
Sbjct: 242 KTETAKNATERTEIVM 257
>09_04_0733 -
19791745-19791906,19792072-19792173,19792246-19792331,
19792655-19792926,19793430-19793521,19793615-19793730,
19794206-19794389,19794467-19794599,19794981-19795075
Length = 413
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = -1
Query: 329 FQHSAFSTSIKHLLESYALQVPANHHTNNVRDIV 228
FQH S++ +L ++A++ PA+ + + D++
Sbjct: 191 FQHPQIQKSLERILYTWAIRHPASGYVQGINDLL 224
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 422 RSTALRAMMAAIEKSVALVFPSSATILSPPDFQHSAFSTSIKHLLESYALQVPANH 255
R+TA+ AM + + + F TIL PP + SIK + +L P +H
Sbjct: 291 RATAITAMNS-LAMRMGASFARLGTILDPPPNAADSLEKSIKQMTALVSLLGPVSH 345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,359
Number of Sequences: 37544
Number of extensions: 302018
Number of successful extensions: 939
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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