Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D06
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   9.1  
SB_7171| Best HMM Match : Nodulin_late (HMM E-Value=0.25)              27   9.1  

>SB_54885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2988

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +3

Query: 9    ASAAVPLAYRNHTTHHRANLSSERRLQNVHFSFLVVPQ*ISQFSIHLETLKCHSRLGVFV 188
            ++ AV   Y  H T    NL      QN  FS L+  + I +  ++   L C  R     
Sbjct: 1694 SACAVMWRYSMHPTLDAFNLRWNTTQQNSSFSVLLDSEVIYESGVYYIGLSCFERNATRD 1753

Query: 189  CRNLKKNK 212
             RN  ++K
Sbjct: 1754 VRNASRDK 1761


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +2

Query: 203  KKQNMIKTIRCH---GRCWCDG*RGPEVHRT 286
            K     + ++CH   G CWC   RG E+ RT
Sbjct: 989  KPTGRYEEVQCHTGTGLCWCVDERGQEITRT 1019


>SB_7171| Best HMM Match : Nodulin_late (HMM E-Value=0.25)
          Length = 472

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 311 KTPSAGSREETGWWQKRERQELQTFRSRPSWLAAR 415
           +TP +        W++R R  LQ+ R++P W   R
Sbjct: 21  RTPWSFKSARAALWKERVRAVLQSVRTQPCWRPVR 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,934
Number of Sequences: 59808
Number of extensions: 339324
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)